Burkholderia cenocepacia J2315: BCAL2888
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Entry
BCAL2888 CDS
T00771
Symbol
rne1
Name
(GenBank) ribonuclease E 1
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcj
Burkholderia cenocepacia J2315
Pathway
bcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCAL2888 (rne1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcj03019
]
BCAL2888 (rne1)
03009 Ribosome biogenesis [BR:
bcj03009
]
BCAL2888 (rne1)
Enzymes [BR:
bcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BCAL2888 (rne1)
Messenger RNA biogenesis [BR:
bcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BCAL2888 (rne1)
Ribosome biogenesis [BR:
bcj03009
]
Prokaryotic type
rRNA processing factors
BCAL2888 (rne1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAR53187
UniProt:
B4EAJ6
LinkDB
All DBs
Position
1:3166411..3169575
Genome browser
AA seq
1054 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQ
ARAFMDIVMPDNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSPAPQRPVEPVAAPAPAPVAAASGGFIGWLKGLFGVSPAPAPAPVAPAPAKEQAARP
ARERTEKTEQRGGDRNRNRRGGAQQAQGGRDPAAAGRGQPQRQEREGKEVRESREGREPR
EGRELREGREGRENREGRENREGREGREGRGPREGREPREGREPREPRENREPRERAEQP
EGVEATGRGERQERGERRERGERRKPTQHAATLETVTRGENHPEPETDKVAAEALPGAEL
AADAEAGARDGEERRRRRRGRRGGRREREEDGAVEQAEQGAEGEVAAQAVTPAAPVAAEP
AHTAAPAVVAAVASAVAVEAVAEQHAAPAAVEAQPAPALAEVAPAASVEPVAAQAAEPAP
VAPAVAEAGPTPVAVSPTDAFEVPAAAPVAAEAPQAAPVEQAAPAAVAIETAPVVVEAAP
AVAEAPVAAAPVEAVAAPAPAPAPAQPAAAPASASLDVVLEQAGLVWVNTDADKFAAAQE
AASRLPRPARVPRERKVLPPADTAPMQQVETTHH
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgtatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcattcaggatgcgctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgtggcaacaagggcgccgccctcaccaccttcatctcg
ctcgccggccgctatctcgtgctgatgccgaacaacccgcgcggcggcggcgtatcgcgc
cgaatcgaaggcgacgagcgccaggaactgcgcgaaacgatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgaggctgcctcgcaaagcggc
aacgccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggatatcggcgaaatcctgatcgatacgaacgaaatccatgatcag
gcccgtgccttcatggacatcgtgatgccggacaacgtcgcgaaggtgaagcgctatcac
gacgacgtgccgctgttctcccgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtcccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactccgcacgcgcgaccaagggcgcggacatcgaggaaacggccacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggcgaagagccagcgtgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggaactgtcgcgccagcgcctgcgcccggcgctgtcggaaggcagc
cacgtgacgtgcccgcgctgcaacggcaccggccacatccgcgataccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgacagccttcctgctgaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgca
tcctggaagatggccgaggaagcggcccgcgagctcgagtcggaaaccggctacagcaag
cgggcggccgaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggcaccgagcccggctccgcagcgtccggtcgagcccgttgccgcccccgccccggcg
cccgtcgccgcggcaagcggcggcttcatcggctggctgaagggcctgttcggcgtgtcg
ccggcaccggcgcccgcaccggtcgcgccggcaccggcgaaggagcaggcagcccgtccg
gcgcgtgagcgcacggaaaagaccgagcagcgcggcggcgatcgcaatcgcaaccgtcgc
ggcggcgcccagcaggcgcaaggcggccgcgacccggcagccgcaggccgtggccagccg
caacgccaggaacgcgaaggcaaggaagtgcgcgaatcgcgtgaaggccgtgagccgcgc
gagggtcgtgagctgcgtgaaggtcgcgagggccgcgaaaaccgcgaaggtcgtgaaaac
cgtgagggtcgcgaaggtcgcgagggccgtggcccgcgtgaaggtcgcgagccgcgtgaa
ggccgtgagccgcgcgaaccgcgcgagaaccgcgaaccgcgcgagcgtgccgaacagccg
gaaggcgtcgaagcaaccggccgtggcgagcgtcaggaacgcggcgagcgtcgcgagcgc
ggcgaacgccgcaagccgacccagcacgcagccacgctcgaaaccgtcacccgcggtgaa
aaccatccggaaccggaaaccgacaaggtggcggcagaagccctgcccggcgcggaactg
gcagccgatgcggaagccggcgcacgtgacggcgaagaacgccgccgtcgccgtcgcggc
cgccgcggcggtcgtcgcgagcgcgaggaagacggcgcagtcgagcaggccgaacaaggc
gccgaaggcgaagtcgccgcgcaagcggtgacgccggccgccccggtcgctgccgaaccg
gctcacacggccgcgccggcagtcgtcgcggccgtggcaagcgcggtcgccgtggaagcc
gtcgccgagcagcatgccgcaccggccgctgtcgaagcgcagccggcaccggccctcgcc
gaagtggctccggccgcctcggtcgagcccgtcgccgcccaggcagccgaaccggcaccg
gtcgcaccggccgtcgcggaagcaggcccgacgccggtcgcggtgtcgccgaccgatgcg
ttcgaagtgccggccgccgctccggtcgctgccgaggcgccgcaagccgcaccggtcgag
caggccgcaccggctgccgtggcgatcgagaccgctccggtggtggtcgaagccgcgcct
gcggtggccgaggcaccggtcgcagccgcgccggtcgaggccgtcgccgcaccggcaccg
gctcccgcccccgcacaaccggcagccgcgcccgcttcggcgagcctggacgtcgtgctg
gagcaggccggtctcgtctgggtgaacacggacgccgacaagttcgcggccgcgcaggaa
gccgcatcgcgactcccgcgcccggcccgcgtgccgcgcgaacgcaaggtgctgccgccg
gccgatacggcgccgatgcagcaggtcgaaacgacgcaccactaa
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