Burkholderia cenocepacia J2315: BCAM0918
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Entry
BCAM0918 CDS
T00771
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bcj
Burkholderia cenocepacia J2315
Pathway
bcj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BCAM0918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcj03021
]
BCAM0918
Transcription machinery [BR:
bcj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BCAM0918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
KIND
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
CAR54775
UniProt:
B4EN36
LinkDB
All DBs
Position
2:1009947..1011812
Genome browser
AA seq
621 aa
AA seq
DB search
MKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAETLL
LNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKR
IEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLLDPNAADAADTDGFSAK
EAEAIENEDEEAEEEEEEEEEEEDDGAAQASANAAQLEALKRASLEKFSQISEWFDKMRR
AFEKEGYKSKAYLKAQETIQSELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHIVVD
KCGMPRSEFIARFPGNETDLDWAEKITAEGHSYSAVLSRNVPAIREQQQRLLDLQARVVL
PLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQE
TGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPAD
AALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSDKLKSFLEGN
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactgcgcgcgctgatcaagctcggcaaggagcgtggcttcctgacgtacgccgaa
atcaacgaccacctgccggacaacttcaccgagaccgaagccctcgagggcatcatcggc
acgttcaacgacatgggcgtggcggtttacgagcaggcgccggacgcggaaacgctgctc
ctgaacgacaacgcgcccgccgcgtcgtcggacgatgaagtcgaagaggaagccgaagtc
gcgctgtccaccgtcgattcggaattcggccgtacgaccgatccggtccggatgtacatg
cgcgagatgggcacggtcgagctgctcacgcgcgaaggcgaaatcgagatcgcgaagcgg
atcgaggacggcctgcgccacatggtgatggccatctccgcgtgcccgacgacgatcgcc
gacatcctcgcgatggccgaacgcgtcgcgaacgaagagatccgcgtcgacgagctcgtc
gacggcctgctcgatccgaatgctgcggacgccgccgatacggacggtttctccgcgaag
gaagcggaagcgatcgagaacgaggacgaggaagccgaagaggaagaggaagaagaggaa
gaggaggaagacgacggtgccgcgcaggcatcggcgaacgccgcccagctcgaagccctc
aagcgcgcgtcgctcgagaagttctcgcagatcagcgagtggttcgacaagatgcgccgc
gcattcgagaaggaaggctacaagtcgaaggcctacctgaaggcgcaggaaacgatccag
agcgagctgatgacgatccgcttcaccgcgcgtaccgtcgaacgcctgtgcgacacgctg
cgtgcgcaggtggacgaagtgcgtcaggtcgagcgtcagatcttgcacatcgtcgtcgac
aagtgcggcatgccgcgctcggaattcatcgcgcgcttcccgggcaacgagacggatctc
gactgggccgagaagatcaccgcggaaggccattcgtacagcgcggtgctgtcgcgtaac
gtcccggcgatccgcgaacagcagcaacgcctgctcgacctgcaggcgcgcgtcgtgctg
ccgctgaaggacctgaaggaaaccaaccgtcagatggcggccggcgaactgaaggcacgt
caggcgaagcgcgaaatgaccgaggccaacctgcgtctcgtgatctcgatcgcgaagaag
tacacgaaccgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatg
aaggcggtggacaagttcgaataccgtcgcggctacaagttctcgacctatgcgacgtgg
tggatccgtcaggccatcacgcgctcgatcgcggaccaggcgcgcacgatccgtattccg
gttcacatgatcgaaacgatcaacaagatgaaccgcatctcgcggcagatcctgcaggaa
accggtctcgagccggatccggcaacgctcgccgagaagatggagatgccggaagacaag
atccgcaagatcatgaagatcgcgaaggagccgatctcgatggaaacgccgatcggtgac
gacgacgattcccatctcggcgacttcatcgaggacaccaacacggtcgcgccggcggat
gccgcgctgcatgccagcatgcgcgacgtcgtgaaggacgtgctcgattcgctgacgccg
cgcgaggcgaaggtgctgcggatgcgtttcggtatcgagatgagcaccgatcacacgctc
gaggaagtcggcaagcagttcgacgtcacgcgcgagcggatccgtcagatcgaagccaag
gcgctgcgcaagctgcgtcacccgagccgttccgacaagctgaagtcgttcctcgaaggg
aactga
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integrated database retrieval system
