Heyndrickxia coagulans 2-6: BCO26_2870
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Entry
BCO26_2870 CDS
T01527
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bck
Heyndrickxia coagulans 2-6
Pathway
bck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCO26_2870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bck03019
]
BCO26_2870
03400 DNA repair and recombination proteins [BR:
bck03400
]
BCO26_2870
Enzymes [BR:
bck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCO26_2870
Messenger RNA biogenesis [BR:
bck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCO26_2870
DNA repair and recombination proteins [BR:
bck03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BCO26_2870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Sigma70_r4_2
GerE
HTH_23
HTH_28
HTH_38
HTH_29
Motif
Other DBs
NCBI-ProteinID:
AEH54926
LinkDB
All DBs
Position
complement(2952208..2954385)
Genome browser
AA seq
725 aa
AA seq
DB search
MEKAKQVLKQYYGYDHFRRGQEAIISRIMDGKDTLGMMPTGGGKSVCYQVPAMLLSGVTL
VISPLISLMKDQVDTLSGMGIPATYVNSSLDPTEINERLAAASKGAYKLIYLAPERLEFP
PFLHLLENINVSLIAVDEAHCISQWGHDFRPSYRLIEKLISQFKPKPVTLALTATATPQV
KKDICQLLMIPEENTVATGFARENLHFQVVKGQDRDAFVLDYILKNKNQSGIIYTATRKE
AERIYHFLVKNGIRAGKYHAGMKETERDSFQDRFLYDDVSVMVATSAFGMGIDKSNVRFV
IHYHMPKNMEAYYQEAGRAGRDGEESDCILLFAPQDIHTQTFLIEQSANEDRKPGEYAKL
RKMIDYCHTEGCFQQFILHYFGEKEAQPCGKCGNCLDTRAKTDVTKEAQMVFSCVKRMQE
RFGKTMIAKVLAGSNDQKIRQFGFDKLSTFGIMKDKTQKEVAELIDFLTADGFLRAKDGT
YPVLMLTKKAVEVLLSKKQVFRKESVRAQQIATDNLLFEKLRTLRKEIADREKIPPYIVF
SDQSLREMSARMPVTREAFLQVKGVGERKAEQYAELFMHVIRTYMEEEGIQAQAQPKALS
HTKKAREDGKEKSHHVTYRLLQEGKTIREIAEIRGMSERTIETHVIKCSDEGFPVEWSRF
IPERYRERIADATSRAGTGRLTPIKELLPDEVSYFMIRAFLQERKHHPDQGKTVSYISGG
DWHHD
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagccaaacaggttttaaagcaatattatggctatgatcatttccgccgcggg
caggaagccattatcagccggatcatggatggcaaggatacactgggcatgatgccgacc
ggcggggggaagtcggtttgctaccaggtgccggccatgcttttatcaggggtcacgctt
gtcatttcgccgctgatttccctgatgaaagaccaggtggatacactttcaggcatgggg
ataccggcaacatatgtgaacagctccctggatccgacagaaatcaatgagcggcttgcg
gctgcatcaaagggcgcatacaaattaatttatctcgcaccggaacggctcgaatttcct
ccttttttgcatcttctcgaaaacatcaatgtctcccttatcgctgtcgatgaagcgcat
tgcatctcacaatggggccacgacttccgcccaagctaccgtttaatcgaaaaactaatt
tcacaattcaagccaaaaccggtgacgcttgctttaaccgctacagcgacgccgcaggta
aagaaagacatttgccagctgctcatgattccggaagaaaacacagtggctacaggtttt
gcccgtgagaacctgcatttccaagtggtgaaaggccaggaccgcgatgcctttgtgctg
gactacatcctgaaaaataaaaaccagtccgggatcatttacacggcaacgagaaaagag
gccgaacgcatttatcattttcttgttaaaaatggcattcgtgcgggaaaatatcatgca
gggatgaaagaaacggagcgcgacagctttcaggaccggtttttatacgatgatgtttcc
gtgatggtcgccacctccgctttcgggatggggatcgacaaaagcaatgtgcggtttgtc
atacattatcatatgccgaaaaatatggaggcgtattaccaagaagcaggacgggccggg
cgcgatggggaagaaagcgactgtattttgttgtttgctccccaggatatccatacgcaa
acttttttaattgagcagtcagccaacgaagacagaaaaccgggcgagtatgccaagttg
cgaaaaatgattgactactgccatacggaaggctgttttcagcagttcattttgcattat
ttcggcgaaaaagaggcacagccgtgcggcaaatgcggcaactgcttggatacccgcgca
aaaacagacgtgacaaaagaagcgcaaatggttttttcctgtgtcaaaaggatgcaggaa
cggttcggcaaaaccatgattgcaaaagtgctggccgggtcaaacgaccagaaaatcagg
caattcggttttgacaagctgtccacttttggcattatgaaagacaaaacgcaaaaagaa
gtggctgaactgattgattttctgacagctgacggttttttgcgtgccaaagacggtacg
tacccggtgcttatgctgacaaaaaaggcagtggaagtcctgctttcaaaaaaacaggtt
ttccggaaagaaagtgtcagggcgcagcaaattgcaaccgataaccttttatttgaaaaa
ctgcgcacacttcgcaaagagattgctgaccgtgaaaaaataccgccttatattgtcttt
tccgaccagtcgctgagggaaatgagtgccaggatgccggtaaccagggaggctttcctg
caggtgaaaggggttggggaaagaaaggcggaacagtacgccgagctgtttatgcacgtg
atccggacatacatggaagaagaagggatacaagcgcaagcgcagccgaaagcattgtcg
catacaaaaaaagcgcgtgaagacgggaaagaaaaaagccatcatgtgacataccgcctg
ttacaagaaggcaaaacgatccgtgaaattgcggaaatccgcggcatgtcggaaagaacg
attgaaacgcatgtgatcaaatgttcagacgagggatttccggtagaatggagccgcttt
attcccgaaaggtaccgggagcgaatcgccgatgccacaagccgggcaggtaccgggcgg
cttacgccgataaaggaattgctgccggatgaggtcagttattttatgatccgggctttc
ttacaggaaaggaagcatcatccggaccaaggaaaaacagtatcatatatttctggaggg
gattggcatcatgattga
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