Shouchella clausii: ABC0016
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Entry
ABC0016 CDS
T00228
Symbol
rocR
Name
(GenBank) transcriptional activator of arginine utilization operon
KO
K06714
arginine utilization regulatory protein
Organism
bcl
Shouchella clausii
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bcl03000
]
ABC0016 (rocR)
Transcription factors [BR:
bcl03000
]
Prokaryotic type
Helix-turn-helix
Other families
ABC0016 (rocR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
PAS_4
PAS_9
HTH_30
AAA_2
PAS
HTH_5
AAA_3
AAA_16
AAA
MCM
AAA_19
HTH_28
AAA_7
AAA_21
DUF6671
HTH_50
HTH_24
Bac_DnaA
HTH_29
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BAD62559
UniProt:
Q5WM16
LinkDB
All DBs
Position
complement(25496..26887)
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AA seq
463 aa
AA seq
DB search
MKKNKTQKNLVQLNHLYQMLIDEINVGIHVIDQDGHTIIYNKKMMEIESMVDTDVLHKNL
LEVFTFHDDERSTLVQALKTGKVTKDVKQTYFNNKGEEITTINNTFPFIENGKITAAVEI
AKDMTQLDHVIKKNVLRKRESHYTFDQIIGNSKAFLAVIEEAKRAARTSSSVLIVGETGT
GKELFAQSIHYASPRSHAPFLAQNCAAIPENLMESLLFGTKKGAFTGALDTPGLFEQADG
GTLLLDEINSLDPALQAKLLRVIQEKTIRRIGDTKDKKVDVRIIATINEDPIDMIAKQRL
RKDLYYRLSVVTLFIPPLRERKEDILPLIEEFIHKYNTLFQMNVKTISEEAKAILFQHDW
PGNARELEHTIEGTMNFISDETEIHIHNLPFRLRNRYQKEVKDTETGNLPAKTLQEKMAE
VEKLYILQALRENNNNVSQTAKNLGMSRQNLQYRLKKFHLSLK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaaaataaaacacaaaaaaatctagtgcaactgaatcacctatatcaaatgcta
atagacgaaataaatgtgggtatccacgttattgaccaagatggccatacgattatatac
aataaaaaaatgatggaaatcgaatcgatggtagacaccgatgtactccataaaaatctt
ttagaagtttttacatttcacgacgatgaacgcagtacacttgtacaagcattaaagaca
gggaaagtaacgaaggatgtcaaacaaacgtattttaataataaaggggaagaaatcaca
accattaacaatacctttccttttatcgaaaatggaaaaattacggctgccgtggaaata
gcgaaagatatgacccaattggatcatgtcattaagaaaaacgtgctgcgaaaaagagaa
agccattatacctttgaccaaatcatcggcaacagcaaagcctttttagcggttatagaa
gaagcaaaacgagccgcccgcacgtcgtcttctgtgctaatcgttggagaaacagggaca
ggaaaagagttatttgcccaaagcattcactatgctagcccgagatcacacgcccctttt
ctagcacagaattgcgcagcgatccctgaaaatttaatggaaagtttattatttggaacg
aaaaaaggagcatttaccggggcattggacacgccaggcttattcgagcaagctgatggc
ggaacgttgcttctggacgaaataaattctctcgaccctgcgttacaggcgaaattatta
cgcgttattcaggaaaaaaccatccgtcgcatcggcgataccaaagacaaaaaagtcgac
gttcgaatcattgctaccattaatgaagatccgatagatatgattgcaaagcagcgctta
cgcaaagatttgtattatcgtctcagcgtcgtcactttatttatcccgcccttgcgtgaa
agaaaagaagacattcttccgcttatcgaggaattcattcacaagtataacacgctattt
cagatgaatgtgaagacgattagcgaagaggcaaaggcgattctgttccagcacgattgg
ccaggaaatgcgcgagaactggaacatacaattgaaggcacaatgaatttcattagtgat
gaaacagaaattcacatacacaacctgccgtttcgattgcgcaatcgctatcagaaagaa
gtgaaagacacagaaacaggcaacttacctgcaaaaacattacaagaaaaaatggcagag
gtcgaaaagctctatattttacaagcgttaagagaaaacaacaacaacgtttcccaaact
gcaaaaaatcttggcatgagcagacaaaatctccaatatcggctgaaaaagtttcacctt
tcattgaagtaa
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