Shouchella clausii: ABC0083
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Entry
ABC0083 CDS
T00228
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcl
Shouchella clausii
Pathway
bcl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABC0083 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcl03400
]
ABC0083 (mfd)
Enzymes [BR:
bcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABC0083 (mfd)
DNA repair and recombination proteins [BR:
bcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABC0083 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BAD62626
UniProt:
Q5WAD4
LinkDB
All DBs
Position
98869..102411
Genome browser
AA seq
1180 aa
AA seq
DB search
MLGLQQLVGSVKEVRAVAKGIENDMNEQLLTGLTGSARTVVSAALFRETGRSQLVVTHNL
YQAQKIYEDLVELLDEDTVYLYPVNELISAEIAVASPEMKAQRLDLLNALVQDFKGIVVA
PLAGIRRLLPPKALWQSSQLHLKTGEDIGDLEEFIKNFVTMGYRRSDMVSAPGEFSVRGG
IVDLYPLTKEHPLRIELFDTEVDSMRYFSLETQRSEGMIDEVTIGPAQEVLLHHSHYSHG
AKLLEEKYEATLKKVASKQTRDKLQEHIPFEIAQLKQSATFEGMYKYMSLYYETPQSLLS
YMPEDAFVWVDEMNRVKEMAEHLQKEEAEWHTAMLEQGSIVHGTHLSLDALARLQQAPQP
VLYTSLFQKQVPSTKPEQIINLSCKSMQNFHGQMDLLTSEVNRWLSNDYTVLFIAGTEDR
ANRLALNLEDEKIDAHLIEAITDLTPSKVQIYTGHLHTGFELSEQKLVVVTEEEVFSKRA
KRPKRRQKLSNAERIKSYSELAVGDLVVHTNHGVGKYLGVETLEINGVHKDYLNLRYAGN
DKLYVPVEQIDQVQKYVGTEEKDPKIYALGGSDWKKVKKKVQTSVEDIADDLIKLYAERE
ASVGHRFSSDGPEQAEFESSFPYQETEDQLRAIKEIKEDMEKQRPMDRLLCGDVGYGKTE
VAIRAAFKAIMDGKQVAILVPTTILAQQHFETISDRFSDFPITVGVLSRFRSRKEQTEVL
KGLKAGSVDLVVGTHRLLSKDVQFRDLGLLIVDEEQRFGVTHKEKIKRMKANIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEFNPAIVREAIERELSRGGQVYVLY
NRVEDIERMTEQISTLVPDARVSYAHGQMNERELESIILDFLEGESDVLVTTTIIETGVD
IPNVNTLIVCNADKMGLSQLYQIRGRVGRSNRVAYSYFTYQPDKVLTEVAEKRLQAIKEF
TELGSGFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLKEAIEERKGEKPKEPPF
KAELNVNIDAYIPERYIPDAKQKIEMYKRFKGVETLEEIADLQDELVDRFGEYPKQVAYL
FEMTKIKLIADQEKVEKITEGKDAVTILLTEETTNRIHVATLVDAAQKIGRDVSIGSQGN
QIKLVIKTKQLSDETLLAYIIELLEALIRADKSKKAMSAS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgttaggattgcagcaattggtgggcagcgtaaaagaagtgcgcgctgttgcaaagggt
attgaaaatgacatgaatgagcaacttcttactggcctgaccggttccgctcgcacggtt
gtaagcgctgcgttattcagggaaacaggaagaagccaactcgtggttacccataattta
taccaagcccaaaaaatatatgaagatcttgttgaattattagatgaggacacagtttat
ctttatcctgtgaacgagctcatctcagccgaaattgccgtcgctagcccggaaatgaaa
gcgcagcgcttggatttgcttaatgcgcttgtacaagactttaagggcattgtcgtcgct
ccgctagctggcattcgccgcttgttgccgccaaaggctttatggcaaagcagccagctc
catttgaaaacaggcgaggacatcggtgatttggaagaatttataaaaaatttcgtcaca
atgggttaccgcaggtctgatatggtatcagcacctggggaatttagtgtgcgcggaggc
attgtcgatctgtatccgcttacgaaggaacatcctttgcgaattgagctgtttgataca
gaagtcgattcaatgcgctacttttcattggagacgcagcgttctgaaggaatgattgat
gaagtcacaattggtcctgctcaagaagtgctgctccatcattcacactatagccacggg
gcgaagttgttggaagaaaaatatgaggcaacgctaaaaaaagtagcaagcaaacaaaca
cgggataaattgcaagaacatattccttttgaaattgcccaactgaagcaatcagctacg
tttgaaggcatgtacaaatacatgtcgctttattatgaaacgccgcaatcgttattgtct
tatatgccagaagatgcgtttgtctgggtggacgaaatgaatcgcgtcaaagaaatggcg
gaacacttgcaaaaagaagaggcggaatggcatacggcaatgcttgaacaagggagcatc
gtccacggtacgcacttgtcccttgatgcacttgcgaggctgcaacaggcgccgcagccg
gttctttatacgtcgcttttccaaaaacaagtaccttcaacgaagccagagcaaatcatt
aacttatcctgtaaatcgatgcaaaatttccatgggcagatggatttgcttacttctgaa
gtcaatcgctggctttctaacgattacaccgttttgttcattgccggaacagaggaccgt
gccaatcggcttgctttaaacttagaagacgaaaaaatcgatgcccatttgattgaggcg
ataacggatttgactccaagtaaagtgcaaatttatacagggcacttgcacaccggattt
gagctatccgaacagaaacttgtcgtcgttactgaagaggaagtattttcaaagcgggcg
aaacgtcctaagcgtcggcaaaagctatcaaacgctgagcggattaaaagctattccgaa
ttagctgtcggcgacttggtcgttcatacgaatcatggtgtcggtaaatatttaggcgtt
gagacgcttgaaatcaatggcgtccacaaagattatttaaatttgcgctatgcgggcaat
gacaagctctatgtgcctgtcgagcaaattgaccaagtgcagaaatatgtcggaacagaa
gaaaaagatccgaagatttatgccctcggaggaagcgattggaaaaaagtaaaaaagaaa
gtccaaacttcggttgaagacattgctgatgatttaattaagctgtatgcagaacgtgaa
gcaagcgttggccaccgcttttcttctgacggaccggaacaagctgaatttgaaagctca
ttcccgtaccaggaaacggaagaccagctacgggccattaaggaaattaaagaagacatg
gaaaagcaacggccaatggatcgcctattgtgcggcgatgttgggtacggaaaaacggaa
gtcgcaattcgtgctgcctttaaagcgatcatggacggcaagcaagtcgccattttagta
ccgacaactattttagcgcaacagcattttgaaacgatttcagaccggttttctgacttt
ccgattacagttggcgttttaagccgtttccgttcgcgaaaagagcaaacggaagtgctg
aaaggcttaaaagcaggatctgtagatttggtcgtcggtacgcaccgtctgctttcaaaa
gacgtacagtttagagacttggggttattgatcgtcgatgaagaacagcgttttggcgtt
acccataaagagaaaatcaaacgcatgaaggccaatatcgatgtgctaacgttgacggcg
acgccgattccgcgaactctccatatgtcgatgctcggtgttcgtgatttatcggtgatt
gagacgccgccagaaaaccgctttcctgtccaaacgtatgtcgttgagtttaatccagcc
attgtacgcgaggcgatcgagcgtgaactaagtcgtggtggccaagtgtatgtcctctat
aaccgtgtagaagacattgagcggatgacggagcaaatttctacgctcgtccctgatgca
agagtaagctatgcacatgggcaaatgaatgagcgtgaactggaatcgatcattttggat
ttccttgaaggggaaagcgatgtgctcgtaacgacaaccattatcgaaacaggcgttgac
attccaaacgtgaatacgctcattgtttgcaacgccgacaagatgggcttgtcccaactt
tatcaaattcgcgggcgtgttggtcgctcgaaccgagtggcgtactcgtattttacgtac
cagcctgacaaagtgttaaccgaagtggctgaaaagcgcctgcaggccatcaaagaattt
actgagcttggctcaggctttaaaattgcgatgcgtgatttaacgatccgcggtgctgga
aacttgttagggtctcaacagcatggctttatcgactctgttggatttgacttgtattcg
caaatgttgaaagaagccattgaagaacggaaaggggaaaaaccgaaagaaccgccattt
aaggcagagctgaatgtaaatattgacgcctacattccagagcggtatatccctgacgcg
aaacaaaaaatcgagatgtacaagcgctttaaaggcgtggaaacgttagaagaaatcgct
gacctgcaagatgaactcgttgatcgtttcggcgaatatccaaaacaagtcgcttatctt
tttgaaatgacaaaaattaagctgattgccgatcaagaaaaagtcgaaaaaattacagaa
ggcaaagacgccgttacgattttattgacagaggaaacaaccaatcgcatccatgttgca
acgcttgtcgatgctgcccaaaaaattggtcgtgacgttagcatcggctcgcaaggaaac
caaattaaactagttattaagacaaagcaactttctgatgaaacattgcttgcgtacatc
attgaattactggaagcattgatccgtgctgacaagtcaaagaaagcgatgtctgcgtcg
taa
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