Shouchella clausii: ABC1568
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Entry
ABC1568 CDS
T00228
Symbol
recJ
Name
(GenBank) single-strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bcl
Shouchella clausii
Pathway
bcl03410
Base excision repair
bcl03430
Mismatch repair
bcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABC1568 (recJ)
03430 Mismatch repair
ABC1568 (recJ)
03440 Homologous recombination
ABC1568 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcl03400
]
ABC1568 (recJ)
DNA repair and recombination proteins [BR:
bcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ABC1568 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ABC1568 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABC1568 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAD64103
UniProt:
Q5WHQ2
LinkDB
All DBs
Position
1688060..1690417
Genome browser
AA seq
785 aa
AA seq
DB search
MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDP
FLLKGMEETIERIALAVKRKERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFT
EGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDIGLDFIITDHHEPPPVLPEAL
AIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL
AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLL
ADDEEEAKALATEIDSLNKERQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVI
GIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMYQELANNRDILPHFGGHPMAA
GMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV
ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSA
IGTVSLNEWNGKVKPQLIIDDLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEG
TKERLGLDVPVYDYRQAPSFFEAYVVLLDLPSNRVELESLFSKKGEPSRVYVVFSEEEES
FFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD
DSIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEES
ILNGL
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaatcaaaaacaagatggcgcattttagaacaaaacgagctgttggcgcaagag
ctcgcagacgagctgcgtgtatcgatgttaacggcccgtcttcttgtacgccggggaatc
caaaccgtccaggcggccaagcgctttttacactacgaagagccgacgttttacgatccc
tttttgttgaaagggatggaggaaacgattgaacgaattgccctcgcagtcaaacgaaaa
gaacgcattcttgtttttggggactatgatgctgatggcgttagttcgacttccgtgatg
ctaacagcgttacaaacgtatggcgccgactgtgattactatataccaaaccgttttaca
gaaggatacgggcccaattgcccagcgctagactttgcaaaaaggcaaggttatcactta
gtgataacagtcgatacaggcatttctgctttgaatgaagctgcccatgccaaagacatc
ggtctggattttattatcactgaccaccatgagccgccgccggttttgccagaagcattg
gcgatcattaatcctaagcagcctggttgcccgtatccatttaaagagcttgccggcgta
ggcgttgcctttaaagttgcacacgctttgctcgggcgcctgcctgaagagctgctcgat
tacgctgtgatcggcacgatcgccgacttggtgcctctcattgatgaaaatcggctgctg
gccaaaaaggggcttcgcgcgattgaatcaagcggccgccctgggatccgtgccttaaag
gaagtatgcggcatgaagcaggaagcaatggatgccgaccatatcggctttgcgattggc
cctcgtctaaatgcagcagggcggctcgattctgctaatccagctgttgagctgctcctt
gctgatgatgaagaagaagcaaaagcgctagccacagaaatcgatagcctcaataaagaa
cggcaagcaattgttagcaaaatgacagaagaagcgattcgccttgtggaaacaacctat
ggcacaaagatcccccatgccatcgttgtagcgaaggaaggctggaatccaggggtcatc
gggattgtcgcttctcgccttgtagagcagttttaccgtccgacaattgtcatgagcatt
gacgaatcttcaggacttgccaaaggctcggccagaagcatcgaagggtttgacatgtac
caagaattggcgaataaccgggatatacttcctcattttggcggacacccgatggcggca
gggatgacacttaaaaccgaggacattgacgacttacgttctcgtttaatcaagcaagcc
aaggagacactaacggacgacatgcttacgccagccacggatatagacctcgttgcagaa
gtggaggatgtaaccgttcaagtgattggcgagttgcaggcacttgccccgtttggcgtt
gccaaccgtaaaccgattgtacttgttgagggtgcgcatatttccgatatgcgccggatt
ggcagcaaccaaaaccatttaaaaatccaatttactggcgcccaaaagccgcttgacgga
attgcctttagaatggggcatttgtttgaagagatcacgccacatgcaaagttatcggcc
atcggaacggtatcgttgaatgaatggaacggaaaagtaaagccacaacttattattgac
gatcttgccgtattggagtggcaactatttgattggcgcagcatccagccaaaccgctta
aacagccggttgcttgacttgcctcgtgaaaaactcgtcgctatttcctttcaagaaggg
acaaaagaaagacttgggttggacgtacccgtatatgattaccggcaagcgccttccttt
tttgaagcttacgtcgtgttgctcgatttgcctagcaaccgggttgaactggaaagtctt
ttttctaagaaaggggagccaagccgtgtttatgttgtgttctctgaggaagaagaatcg
ttttttcaaacgaacccaaaccgcgagcagttcaaatggtattatggttttataaagaaa
aaccaacgcttttcactgaatcaactcggcgctaagcttgaaaagcacaaaggctggtca
gcccgcacggtcgaatttatgaccactgtatttttagaacttggttttatcaagcttgac
gacagcatcgttgaagcagtagaaaaccctgaaaaaaaagcgttgactgcatcgccgacc
taccaagccaagcaagaaaaagcatggcttgagaatgaatttgtttttgcttcttatcaa
cagttaaaagaatggttccaggctgccatcgaagggagcgctgaaacaaaagaggagtcg
atcctaaatggattataa
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