Shouchella clausii: ABC2109
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Entry
ABC2109 CDS
T00228
Name
(GenBank) ATP-dependent DNA helicase RecS
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bcl
Shouchella clausii
Pathway
bcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABC2109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcl03019
]
ABC2109
03400 DNA repair and recombination proteins [BR:
bcl03400
]
ABC2109
Enzymes [BR:
bcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABC2109
Messenger RNA biogenesis [BR:
bcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABC2109
DNA repair and recombination proteins [BR:
bcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABC2109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
HTH_23
GerE
HTH_29
Acid_PPase
Motif
Other DBs
NCBI-ProteinID:
BAD64644
UniProt:
Q5WG61
LinkDB
All DBs
Position
complement(2227413..2229506)
Genome browser
AA seq
697 aa
AA seq
DB search
MDQAEHVLRSLYGYTAFRPGQQKIIESILNKEDALVVMPTGGGKSLCYQIPAAVLEGVTL
VISPLIALMKDQVDAVNEIGIPATYINSSLTKAEERKRLKDVADGNISLLYVAPERLYEP
SFQAALAKQPLALIAIDEAHCMSQWGHDFRPSYLTMADWIDSLPEKVQVVALTATATPDV
ARDICRRLHIDENNQHLTGFKRTNLTLRVLKGQKKTAFLQQYVEANQGVPGIIYASTRKE
AEAIYRAIDGKTNAVLYHGGLPEKERTESQEAFVYDRADVMVATNAFGMGVNKANVRYVL
HANMPGTLEAYYQEAGRAGRDGEPSECMLLYQAQDVQTQRFFIEQSDASEEKRKHDFEKL
QWMSRYAHTNQCLEQFILSYFGEDAGEPCGKCSNCKREGEQQDVTRDAQKVLSCVVRVKE
RFGKTVIAQVLTGSKNKKIEQLGLDKLSTYGLMKDRSAKEVQAFIDFLLAEQYIGLTPAS
YPTIQLLPKGAAVLKGEGQVYQYKETVERTVSDEDPIFAALRAERKALADEQGIPPYLIF
SDKTLREMAAVAPQSLETLATISGVGEHKLSKYGEAFLKTLTQFEKQENAGLPLDKAQST
GHKRVSREEVIKHFEAGQAPAQIAATLGFSEQTIVKHLIAAEKNNETTGVANLVEKEKAA
LIRQAIKEVGSSYLKPIKEHAGDGVSYTEIRIVIELG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
ttggatcaagcggagcacgtgttgcggtcattgtatggctatacggcttttcggcctggc
caacaaaaaattattgagtcaattttaaataaggaagatgctcttgtcgtcatgccaact
ggcggcggcaagtctctatgctatcaaattccggctgccgtgcttgaaggcgttacgctc
gtcatttctcctttaattgcgttaatgaaagaccaagtagacgctgtcaatgaaatcggc
atacctgctacttacattaatagttcattgacgaaagcagaagaacgaaagcgtttgaaa
gatgtcgctgacggaaacatttcgttgttgtatgttgcacctgaacgcctttatgagcca
tcgtttcaagcagcgttggcaaagcaaccccttgccttaatcgccattgatgaagcccat
tgcatgtcacagtgggggcatgactttcggccaagctatttgacgatggccgactggatt
gattcactaccagaaaaagtgcaagttgtagcgcttacggcgacggcgacaccggatgtg
gcgcgcgacatatgcaggcgccttcacattgatgaaaacaaccaacatcttactgggttt
aaacgaaccaatttgacattgcgtgtgttgaaaggacagaaaaaaaccgcctttttacag
caatacgttgaagcaaaccaaggggttccaggtattatttatgcctcaacgcggaaagaa
gcagaagcgatttacagagccatcgatggaaaaacaaacgctgttctctaccatggcggc
cttccagagaaggaacggaccgaaagccaggaagcgtttgtctatgaccgggctgatgtc
atggttgccacaaatgcgtttggcatgggcgtcaataaagccaatgttcgctatgtgctt
catgccaatatgccagggacgctcgaagcttattatcaagaagccgggcgtgccggtcga
gatggcgagccaagcgagtgcatgttgctataccaagcacaagacgttcaaacgcaacgt
ttttttattgaacagtccgacgcctctgaagagaaacggaaacatgactttgaaaaactg
caatggatgagccgttatgcccataccaaccaatgtttagagcaatttattttaagctat
tttggcgaggatgcaggtgaaccgtgtgggaaatgcagcaattgcaaacgggaaggggaa
cagcaagatgtcacacgcgatgcgcaaaaagtgctttcttgcgttgttcgtgtcaaagag
cgatttggaaaaacagtgattgcccaagtgttgacaggctcaaaaaacaagaaaattgaa
cagctcggtttagataaattgtcgacatacgggctgatgaaagacagatccgcaaaagaa
gtccaagcatttatcgactttttactagcagaacaatacattgggttaacgcctgcttcg
tatccgaccattcaattgctgccaaaaggcgcggcggttctaaaaggcgaaggccaagtt
tatcagtacaaagaaacggttgaacgaacagtaagtgacgaagaccccatctttgccgca
ctccgtgctgagcggaaagcattggctgatgagcaaggaattcctccttatttgatcttc
tccgataaaacattaagagaaatggccgctgtcgcccctcagtcattggaaacattggct
acgatttctggcgtgggcgaacacaagctcagcaaatacggagaagcttttttaaaaacc
cttacccaatttgagaagcaagaaaacgcgggtttgcctttggataaggcacagtctacc
gggcacaaacgtgtaagtcgtgaggaagtcatcaagcactttgaagctggacaagcacca
gctcaaatcgcggcaacactcggttttagcgaacaaacgattgtgaaacatttaattgct
gctgagaagaacaacgagacgacaggtgtcgccaatctcgttgagaaagagaaggcggcc
ttgatccgccaagcaatcaaagaagtcggctcttcttatttaaagccaattaaggaacat
gccggtgatggggtatcttatacagagatacgtattgtcattgaattagggtga
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