Shouchella clausii: ABC2200
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Entry
ABC2200 CDS
T00228
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcl
Shouchella clausii
Pathway
bcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABC2200 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcl03019
]
ABC2200 (deaD)
03009 Ribosome biogenesis [BR:
bcl03009
]
ABC2200 (deaD)
Enzymes [BR:
bcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABC2200 (deaD)
Messenger RNA biogenesis [BR:
bcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABC2200 (deaD)
Ribosome biogenesis [BR:
bcl03009
]
Prokaryotic type
rRNA helicases
ABC2200 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAD64735
UniProt:
Q5WFX0
LinkDB
All DBs
Position
complement(2325666..2327279)
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AA seq
537 aa
AA seq
DB search
MTYFTDFDISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPV
VDKVTEERYIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALRQGV
QVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQTLLF
SATMPPAIRKLSRKYMNDPKTVTINKGEVTAPSINQVYYKVLERNKIDSLCRIIDSDDVE
LGILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIEFLIATDVAA
RGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRSIEKEIKM
HIPSASVPTIEEVVEKQQSSWKNLIQDTIEQGGKEMELFLPLVDEILAEQDPKQVVAALL
KLKFSTETATEDAGYSFGDTGGAKGMVRFFINVGRNVNLTPKILGEEIGRLVGIPVKSIG
RIDIFENFSFVDVPEEAAPFVYEGLRYSRINGARVNLEPAKPRPKRERRTPAGSRRS
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgacctattttacagactttgatatttcggaccaagtgaaacaagcaatccaggatatg
gggtttgaagaaccatcccctatccaagaaaaagcgattcctgccattttgacaggtggc
gatgtaattggccaagcgcaaacagggactggaaaaacagctgcttttgggataccggtt
gtcgataaagtgactgaagagcgttacattcaagcgttaattttgacgccaacaagggaa
ctggccattcaagtttctggagaactgcaaaagctatcggctcataaacggattcggacg
ttgccgatttacggcgggcaatcgatcggccaccaaatcaaagcgttgcgccaaggagtg
caagtagtgattggtaccccagggcggatgcttgaccatttgcgccgtggaacgctcaaa
cttaattcggtccataccgttgtccttgacgaagccgacgaaatgctcgatatgggcttt
gtcgatgacatcgaagcgattttaaaggaagtcaatcaagtgcgacaaacgttgttgttt
tctgctacaatgccgcctgcgatccgcaagctgtcacgaaaatacatgaacgatccgaaa
acagtgacgattaataagggcgaagtgacggcgccttcgatcaaccaagtttattataaa
gtattggagcggaataaaattgactccctttgccgcatcattgatagcgatgacgtggag
ctcggcattttgttttgccgcacgaaaaaaggtgtcgctgaactgacagaagcacttcaa
gctcggggctatctcgttgatggtctccatggagacttgacacaatctcagcgtgatgtt
gtcatgaaaaaattccgcgactcatcgatcgagttcctcattgctacagacgtagctgct
cggggcatcgatgtggaaaatgtcacccatgtcatcaactacgatattccacaagaccct
gaaagctatgtgcaccggattggccgtacagggcgagcgggccggacaggcgcagcgatt
acgttggttacgcctcgggaaatgaagcatctccgctctattgaaaaagaaatcaagatg
cacattccgtcagcgagtgtaccgacgattgaagaagtagttgaaaaacagcaaagttct
tggaaaaacttaattcaggatacaattgagcaaggcggcaaagaaatggagttgttcttg
ccccttgtcgatgaaattcttgctgagcaagaccctaaacaagtggttgcggcactattg
aaattaaagttttctacagagacggcaaccgaagatgctggctacagctttggggacaca
ggcggtgctaaaggaatggtccgcttcttcatcaatgttggacgaaatgtcaatttgacg
ccgaaaattttaggcgaagaaatcggccgccttgtcggcattcctgtcaaatcgattggc
cgcatcgacatctttgaaaacttctcctttgtggacgtaccagaagaggcggcgccattt
gtgtatgaaggcttgcgctattcccgtattaatggagcgcgcgtcaaccttgaacctgct
aagcctcgcccgaaacgggagcggcgcacgccagcagggtcgcgccgttcatag
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