Shouchella clausii: ABC2425
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Entry
ABC2425 CDS
T00228
Name
(GenBank) metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bcl
Shouchella clausii
Pathway
bcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABC2425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcl03019
]
ABC2425
Messenger RNA biogenesis [BR:
bcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABC2425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
BAD64960
UniProt:
Q5WFA0
LinkDB
All DBs
Position
2553018..2554685
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AA seq
555 aa
AA seq
DB search
MKQVKNNQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIMFPQDELLGIDYVIPDYTYL
IKNRDKIKGLFITHGHEDHIGGIPYLLREINIDVYGGKLALGLLKGKLEEHGLLRSAKLH
EIAEDQVVKFTKTSVSFFRTTHSIPDSYGVVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAKIGDEGVLCLLSDSTNSEIPTFTMSERKVGESINNVFQKVDGRIIFATFASNIHRLQQ
VIQAAVDYGRKVCVFGRSMESAITIGQELGYINAPKHTFIEHSQLNKLPDNKVTILCTGS
QGEPMAALSRIAFGTHRQIQIIPGDTVVFSSSPIPGNTLSVGKIINQLYRVGANVIHGPL
SDIHTSGHGGQEEQKLMLRLMKPQYFLPIHGEYRMLRTHNRLAQDCGVKEENCFIMDNGD
VLALHPNEAGVVGKIPSGSVYVDGNGIGDIGNIVLRDRRILSEEGLVIVVVSLDMKEFKV
TAGPDIISRGFVYMRESGDLIHEAQKMLAKHLNSVMEKKTSQWSEIKNEMTELLGPFLYE
RTKRKPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaagtaaaaaacaaccaaacagctgttttcgctttaggcggcttaggcgaaatt
ggcaaaaatacgtacggtgttcagttccaagacgaaattattcttattgatgctggaatt
atgtttcctcaagacgagcttcttggcatcgattatgtcattcccgactatacgtactta
atcaaaaatcgggacaaaatcaaaggcttgtttattacccatggccatgaagaccatatc
ggcggaattccttatttgttgcgggaaatcaacattgatgtctatggcggcaagcttgca
ctcggcctcttaaaaggaaaacttgaagaacacggcttgctacgcagcgctaagcttcac
gagattgcagaagaccaagtcgtcaaattcacgaaaacatcggtgtcgtttttccggaca
acccatagcattcctgactcatacggcgttgttgtcaaaacgccaccaggaaacattgtc
catacaggcgattttaaatttgactttactcctgttggcgaaccggcaaatttaacgaaa
atggcgaaaatcggcgatgaaggcgtactttgcttgctgtctgacagcaccaatagcgaa
attccgacttttacaatgtccgaacgaaaagtaggcgaaagcatcaacaacgttttccaa
aaagtcgatgggcgcattatttttgccacgttcgcttcgaatatccatcgcttgcaacaa
gtgatccaggccgcagttgactacggccgcaaagtatgtgtatttggccgcagcatggaa
tcagccattaccattggccaagagcttggctacatcaatgcgcctaaacatacattcatt
gagcactcacagttaaacaaactccctgataacaaagtaacgattctttgcacaggaagc
caaggtgaaccgatggcagccctatcacggatagcttttggaacacaccgccaaattcaa
attattccaggggatacggttgtgttttcttcttcgccaattccaggaaacacgcttagc
gttggaaaaatcatcaaccaactataccgtgttggcgcaaatgtcatccatggcccactt
agtgatatccatacttctgggcacggcgggcaggaagaacagaaactgatgttgcggctt
atgaaaccgcaatacttcttacccatccatggcgaatatcggatgctgcgcactcataac
cgcctcgctcaagactgtggcgttaaagaagaaaactgttttattatggataacggcgat
gtcctcgcgctccatcctaatgaagcaggggtcgtcggcaaaattccgtctggctctgtt
tatgtggatgggaatggcatcggcgatattggcaatatcgtgcttcgtgaccgccgaatt
ctctcagaggaaggcttagtcatcgttgtcgttagcttagatatgaaggaattcaaagtc
acagctgggccagatatcatttcccgcggttttgtgtacatgagggaatcaggcgatttg
attcatgaagcccaaaaaatgctcgctaaacatttaaacagcgtcatggaaaagaaaacg
tctcagtggtctgaaattaaaaacgaaatgaccgagcttctcggaccatttttgtacgag
cgtacgaaacgcaaaccgatgattttgccgattatcatggaagtataa
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