Shouchella clausii: ABC3943
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Entry
ABC3943 CDS
T00228
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcl
Shouchella clausii
Pathway
bcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABC3943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcl03019
]
ABC3943
03009 Ribosome biogenesis [BR:
bcl03009
]
ABC3943
Enzymes [BR:
bcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABC3943
Messenger RNA biogenesis [BR:
bcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABC3943
Ribosome biogenesis [BR:
bcl03009
]
Prokaryotic type
rRNA helicases
ABC3943
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DD_DDX21-DDX50
HTH_RNase_II
Flavi_DEAD
BKRF4
DUF4422
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAD66474
UniProt:
Q5WAY6
LinkDB
All DBs
Position
complement(4100310..4101791)
Genome browser
AA seq
493 aa
AA seq
DB search
MANFEQFGLDASVVQAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPL
VNRIDSSNPLVQGLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGKQIRSLKQR
PHIIVATPGRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAETPQETRQTL
LFSATMPKRMESLASKFMKNPTRIAVKAKEVTMENIAQQFIEVHEREKFDVLCRLIDLET
PDLSIVFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLVATDV
AARGLDISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVKLIESVS
KRRMTQRPKPTYEEALEGQKQSTLNELRELAAKGEQDSYRVAAKELLQETDAVTALAAAL
KLLTKEPDQTPVKLTSEAPLRTKKRHGNGGRDGRRHNDRDRRPWGQKRGRDGRRSGHQRK
WASSNGKAGKRLS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaattttgaacaatttggcttggatgcttctgtcgtccaagcagtaacgaatatc
ggctttacggaagccacgccaatccaacaagagacgattgagctcgtactcgcaggcaaa
gatgtgattggccaagcccagacaggcactggcaaaacaggtgcttttggcattccatta
gtcaatcgcattgactcaagcaatcctcttgtccaaggtcttgtattggcgccaacgagg
gagctagccaaccaagttgagcaggcattgcgtcaatttgggcgtgtcaaaggtgtacgc
acaaccgttgtatacggcggtgaagactttggcaaacaaatccgctccttgaaacagcgc
ccgcacattattgttgctacgccagggcgtttgcttgaccatatgcgtcgtaaaacaatc
cgccttgaatcgattgaaacggtcgtattggatgaagcggacgaaatgttgaacatgggt
tttattgaggacattgaaacgattttggcagagacacctcaagaaacacggcaaacattg
cttttttcagcaacaatgccaaagcggatggagtcactagccagcaagtttatgaaaaac
ccaacacggatagctgtgaaagcaaaagaagtgacaatggaaaacattgcccagcagttt
attgaagtccatgaacgggaaaaatttgatgtgctctgccgcctaattgatctagagacg
cctgatctttccattgtgttcggacggactaaacggcgcgtcgatgagctagcggaagct
cttattaaacgaggttaccgggctgaaggcttgcatggcgatttaaaccaagcgaaacgt
aacagcgtcttgcgcaaatttaaagaaggtttaatcgatgtcctcgttgctaccgacgtt
gcagcgcgtggccttgatattagcggcgttacacacgtctttaactttgatttgcctcaa
gatccagaaagctacgtccatcgtatcggtcgtactggacgagcgggccgttctggcatt
gcgattacgctggcaacaaaaccagaacgtgagcacgtcaaattgattgaaagtgtctcg
aaaagacggatgactcagcggccgaagccgacatatgaggaagcgcttgaaggtcaaaaa
cagtcaactttaaacgaacttcgtgaattggctgcaaagggcgagcaagacagctaccga
gtagcagccaaagaactgctccaagaaacagatgcagtcacggccttggcggcggcgttg
aaattgctgacaaaagagccagaccaaacgcctgtgaaactcacaagcgaagcgccactg
cgtacgaaaaagcgccacggaaatgggggccgtgatggccgccgtcataatgatcgcgat
cgtcgcccttgggggcaaaaacggggccgcgacggacggcgcagcggtcatcaacggaag
tgggcttcatcgaacggcaaggcaggcaagcgtttatcgtaa
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