Bucephala clangula (common goldeneye): 308443828
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Entry
308443828 CDS
T11949
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform 1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla03018
RNA degradation
bcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308443828 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
308443828 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcla03019
]
308443828 (LSM5)
03041 Spliceosome [BR:
bcla03041
]
308443828 (LSM5)
Messenger RNA biogenesis [BR:
bcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
308443828 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
308443828 (LSM5)
Spliceosome [BR:
bcla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
308443828 (LSM5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
LSM14
Motif
Other DBs
NCBI-GeneID:
308443828
NCBI-ProteinID:
XP_080804723
LinkDB
All DBs
Position
6:complement(61895868..61900025)
Genome browser
AA seq
91 aa
AA seq
DB search
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaacgccaccaccaacccgtcgcagctcttgccactcgaacttgtggataaa
tgtataggctctcgcattcatatcgtgatgaagagtgataaagaaatcgttggaacactt
ctaggatttgatgattttgtcaatatggtgttagaagatgttacggaatttgagattaca
cctgagggtagaagaatcacaaaactagaccagattttgctaaatggaaataacataaca
atgctggttcctggaggagaaggacctgaagtataa
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integrated database retrieval system
