Bucephala clangula (common goldeneye): 308444361
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Entry
308444361 CDS
T11949
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3 isoform 1
KO
K14408
cleavage stimulation factor subunit 3
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
308444361 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcla03019
]
308444361 (CSTF3)
Messenger RNA biogenesis [BR:
bcla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
308444361 (CSTF3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
PRP6_TPR
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
308444361
NCBI-ProteinID:
XP_080805820
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All DBs
Position
7:7246929..7296523
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AA seq
718 aa
AA seq
DB search
MSGDGGAGEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVA
QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ
YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV
HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME
YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE
KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSAS
ELKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAP
PGLHPVPGGVFPVPPAAVVLMKLLPPPVCFQGPFVQVDELMEIFRRCKLPDTVDEAVRII
TGGLPEITVEGNGPVENNAMLNKGVKRPNEDSDDDEEKGSVVPPVHDIYRARQQKRIR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagacggaggcgccggcgagcaggctgccgaatatgtcccagaaaaagtgaag
aaagctgaaaagaaattagaagagaatccatatgaccttgacgcttggagcattctcatt
cgagaggcacagaatcaacctatagacaaagcacggaagacctatgaacgccttgttgcc
cagttccccagttctggcagattctggaaactgtacattgaagcagagattaaagcaaaa
aattatgacaaagtggaaaagttatttcagcgatgccttatgaaggttttacacattgat
ttatggaaatgttacctttcctatgtacgagaaaccaaggggaagctacctagctacaaa
gaaaaaatggctcaggcatatgattttgctctggataagattggcatggaaatcatgtca
taccagatctgggtggattacatcaattttttgaagggcgtagaagcagtaggatcttat
gctgaaaaccagaggataacagctgtccgtagggtttaccagcgtgggtgtgtgaatcca
atgattaacatagaacagctctggagagattataacaaatacgaagagggaatcaatatt
cacttagctaagaagatgattgaagacaggagtagagattacatgaatgcacgacgtgta
gcaaaggaatatgagacagttatgaaaggcctggaccgcaacgctccttctgtcccccca
caaaataccccacaagaggctcagcaggtagacatgtggaagaaatacatccagtgggaa
aagagcaacccgctacgcacagaagatcaaactctcataacaaaaagagttatgtttgcc
tatgagcaatgccttttggttctgggacatcacccagatatctggtatgaagctgcacag
tatcttgagcaatctagtaagctgctagctgaaaaaggggacatgaacaatgccaaactt
ttcagtgatgaggctgctaatatttatgaaagagcgatcagcactttactaaagaagaat
atgcttctttattttgcatacgcagattatgaagagagtcgaatgaagtatgagaaagta
cacagcatatataatcgactcttggctattgaagatatcgatcccactctggtttatatc
caatatatgaaatttgcaaggcgagcagaaggcataaaatctggaagaatgatatttaag
aaagcaagagaagatgcccggacccgccaccatgtctatgttacagcagctttaatggag
tattattgtagtaaggataagtctgtggcctttaagatttttgagctggggctgaagaaa
tatggggacattccagaatatgtgctggcatatatcgactacctgtctcaccttaatgag
gacaataatacaagagttttgtttgaacgtgttttaacttcagggagcctcccacctgag
aaatctggggaaatctgggctcggtttttagcttttgaaagtaacattggtgatctagca
agtatactgaaagttgaaaaacgaaggtttacagcattcaaggaagaatatgagggtaaa
gaaacagccctgctcgtagacaggtataagttcatggacttgtacccttgctctgcaagt
gaacttaaggctcttggttataaggatgtctctcgtgccaagctggcagctataattcca
gaccctgtggttgcaccgtccattgtgcctgttctcaaagatgaagtagacagaaagccc
gaatatccaaaaccagacactcaacaaatgattccattccagccaagacacttagcaccc
ccaggtttacatcctgtaccaggtggtgtatttcctgttccaccagcagctgtagtttta
atgaagctcctgccacctcccgtttgttttcagggtccctttgttcaagtggatgagctc
atggagatatttagaagatgcaaactgccagacactgttgatgaagcagtgcgaataatt
actggaggcctacctgaaataactgtggaaggcaacggacctgtggaaaataatgctatg
ctcaacaagggtgtcaagagaccaaatgaagattctgacgacgatgaggagaaaggatca
gtagttccccctgtacacgacatttacagagcacgacaacaaaagagaatccggtga
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