Bucephala clangula (common goldeneye): 308444591
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Entry
308444591 CDS
T11949
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
308444591 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcla03019
]
308444591 (CLP1)
Enzymes [BR:
bcla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
308444591 (CLP1)
Messenger RNA biogenesis [BR:
bcla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
308444591 (CLP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_18
TniB
MMR_HSR1
ATP_bind_1
AAA_16
AAA_22
NodI_C
CbiA
Sigma54_activat
nSTAND3
Motif
Other DBs
NCBI-GeneID:
308444591
NCBI-ProteinID:
XP_080806184
LinkDB
All DBs
Position
7:complement(12107997..12110298)
Genome browser
AA seq
425 aa
AA seq
DB search
MAEESGEEKKQVAKFELERETELRFEVEASQTVQMELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDDR
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSMADSADDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagagcggcgaggagaagaagcaggtggccaagttcgagctggagcgcgag
acggagctgcgcttcgaggtggaggcctcgcagacggtgcagatggagctgctgaccggc
atggccgaggtgttcggcaccgagctgacccgcaacaagaagttcaccttcgacgccggc
gccaaggtggccgtcttcacctggcacggctgcagcgtgcagctcagcgggcgcaccgag
gtggcctacgtgtccaaggacacccccatgctgctctacctcaacacgcacacggccctg
gagcagatgcgccggcaggcggagcgcgaggacgagcgggggccccgcgtcatggtggtg
ggccccaccgacgtgggcaagtccaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtgggccagggctccgtctccatcccc
ggcaccatgggcgccctctacatcgagcggccggcggacgtggaggaggggttttcgctc
caggccccgctggtctaccactttggctccaccacgccgggcaccaacatcaagctctac
aacaagatcacgtcccgcctggccgacgtcttcaaccagcgctgcgaggtgaaccggcgc
gcctcggtgagcggctgcgtcatcaacacgtgcggctgggtgaagggctcgggctaccag
gcgctggtgcacgccgcttccgccttcgaggtggacgtggtggtggtgctggaccaggag
cgtctctacaacgagctcaagagggacctgccccacttcgtgcgcaccgtgctgctcccc
aaatccggcggggtggtggagcgctccaaggacttccgccgcgagtgccgggacgaccgc
atccgcgagtacttctacggcttccggggctgcttctacccgcacgccttcgacgtcaag
ttctccgacgtcaagatctacaaggtgggggcgcccaccatcccggactcctgcctgccc
ctggggatgtcgcaggaggacaaccagctgaagctggtgccggtgacgccgggccgggac
atggtgcaccacctgctgagcgtcagcatggccgacagcgccgacgacaacatctcggag
accagcgtggccggcttcatcgtggtcaccggcgtcgacctggagcgccaggtcttcacc
gtgctctcacccgcgcctcgccccctgcccaagaacttcctcctcatcatggacatccgc
ttcatggacctcaagtag
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integrated database retrieval system
