Bucephala clangula (common goldeneye): 308444778
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Entry
308444778 CDS
T11949
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla03420
Nucleotide excision repair
bcla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
308444778 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
308444778 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bcla04121
]
308444778 (DDB1)
03400 DNA repair and recombination proteins [BR:
bcla03400
]
308444778 (DDB1)
Ubiquitin system [BR:
bcla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
308444778 (DDB1)
DNA repair and recombination proteins [BR:
bcla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
308444778 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
308444778 (DDB1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
308444778
NCBI-ProteinID:
XP_080806479
LinkDB
All DBs
Position
7:complement(40741666..40757824)
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDCHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcccagaagccgacagccgttaacggctgcgttacc
gggcacttcacctcggcggaggacctgaacctgctgattgccaagaacacgcggctggag
atctatgtggtgacggccgaggggctgcggcccgtcaaggaggtgggcatgtatggcaag
accgccgtcatggagctcttccgccccaagggcgagagcaaggatctgctcttcatcctg
acggccaagtacaacgcctgcatcctggagtacaagcagaacggggacagcatcgacatt
atcacccgcgcccacggcaacgtgcaggatcgcatcggtcgtccctcggagaccgggatc
atcggcatcattgacccggagtgccggatgattggcctgcggctctacgacggcctcttc
aaggtcatccccctggaccgggagaacaaggagttaaaggcttttaacatccgcctggaa
gagctccaggtcatcgacgtgaagttcctctacggctgccaggccccaaccatctgcttc
gtctaccaggaccctcagggtcggcacgtcaagacgtacgaggtgtctctgcgcgagaag
gagttcaacaaaggtccttggaagcaggagaacgtagaggctgaagcctccatggtcatc
gcagtgccagagccttttggaggtgcaatcatcattgggcaggagtccatcacctatcac
aacggagataaatacctggctatagctccacctatcatcaagcaaagtacaatcgtgtgc
cacaaccgcgtggatcccaacgggtcccgttacctgctgggggacatggaaggacgcctc
ttcatgctgctcctggagaaggaggaacagatggacggcacggtcaccttgaaggacctg
cgtgtggaactgctcggtgagacatccattgcagagtgcttgacctacctggacaacggt
gtggtgtttgttggttctcggcttggggattcccagcttgtgaagctcaacgtggacagc
aatgagcagggctcctatgtagtggctatggaaaccttcaccaacctcggtcctatcgtc
gacatgtgtgtagtagacctggaaagacaaggccaagggcagctggtcacgtgctcaggt
gcgtttaaagagggttcgctacggatcatccggaacggcattgggattcacgagcatgcc
agcattgacctgccgggaattaaaggcttgtggcccctgaggtcggattgtcatcgtgag
actgacaataccttggtgctgtccttcgttggccagaccagggttcttatgttaaacgga
gaggaggtagaagagacggagctcacagggtttgtggatgatcagcagacattcttctgt
ggcaatgtggctcatcagcagttgatccagatcacctctgcctctgtgagactggtcagt
caggaacccaaagccctggtgagcgagtggaaagagcccaatgggaagaacatcagcgtg
gcttcctgtaacagcaaccaggtggtggtggctgtgggacgagccctgtactacctggag
atccgaccccaggagctcaggcagatcagctgcacagaaatggagcatgaagttgcctgc
ctggacatcactcctctgggggacactaacggcatgtccccactgtgtgccatcggactc
tggactgacatctctgcccgcatcctgaagctgccttcgtttgagctgctgcacaaagag
atgctgggcggagaaattatccctcgctccatcctgatgacgacctttgagagcagccat
taccttctgtgtgccctgggagatggggcgctcttctactttgggctcagtctcgagaca
ggcttgctgagtgaccgcaagaaggtgactctggggacccagcccactgtcctgaggact
ttccgctccctgtccaccaccaacgtgttcgcctgctctgaccgccccaccgtcatctac
agcagtaaccacaagctggttttctccaacgtcaacctgaaggaggtgaactacatgtgt
cccctcaactcggatgggtatcccgacagcttggcgctggccaataacagcactctgaca
atcggcaccattgatgagatccagaagctgcacatccgcacggttcccctctacgaatca
cccaggaaaatctgctaccaagaggtatcgcagtgttttggcgtgctctcaagtcgcatc
gaggtgcaggatgccagtgggggcaccactgcgctcagacccagcgccagcacccaggcc
ctgtccagcagcgtgagtaccagcaagctgttctccagcagcacagcaccgcacgagaca
tcctttggagaggaggtggaggtgcacaacctgctcatcatagatcagcacaccttcgaa
gtgcttcatgctcaccagtttctgcaaaacgagtatgccctcagcctggtctcctgcaaa
cttggcaaggatccaaacacctacttcattgtgggcactgccatggtgtatcccgaggag
gcagagcccaaacagggccgcatcgtcgtcttccactactccgatgggaagctgcagagc
ctggctgagaaggaggtgaagggagctgtatattccatggtggagttcaacgggaagctg
ttagccagcatcaacagcacggtgcgcctgtacgagtggacagctgagaaggagctgcgc
acagagtgcaaccattacaacaacatcatggcactctacctgaagaccaagggagacttc
atccttgtgggagatctgatgcgatctgtcctgctccttgcatacaagcccatggaagga
aactttgaggagattgcccgggacttcaatccaaactggatgagtgccgtagagatcctg
gatgacgacaacttcttgggagcagagaatgccttcaacctgtttgtgtgccagaaggac
agtgctgccacgaccgacgaggagcgccagcacttgcaggaagtggggctgtcccacctg
ggagagtttgtcaacgtcttctgtcacgggtccctggtcatgcagaaccttggcgagacg
tccactccgacacaaggatcggttctctttggcacagtcaatggcatgataggcctggtg
acctcgctgtcggagagctggtacaacctgctgctggacatgcagaacaggctgaacaaa
gtcatcaagagcgtgggcaagatcgagcactccttctggagatcatttcacacggagcgc
aagacagaaccagctacgggcttcattgatggtgacctgattgaaagcttcctggacatc
agcaggcccaagatgcaggaggtggtggcaaacttgcagattgacgacggcagcggcatg
aagagggaggccaccgtagatgacctgatcaagatcgtggaggagctgacccggatccac
tag
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