Bucephala clangula (common goldeneye): 308444784
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Entry
308444784 CDS
T11949
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308444784 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcla03019
]
308444784 (PATL1)
Messenger RNA biogenesis [BR:
bcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
308444784 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
308444784 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
308444784
NCBI-ProteinID:
XP_080806485
LinkDB
All DBs
Position
7:complement(40648515..40654015)
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AA seq
761 aa
AA seq
DB search
MFRYPSPEECPLDEEEDGFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEEKP
RGAGQRAVPGGEDAELLGEPEDTLAERLTRLVIDSELEDPAIMRAVHTRAPGAQPAPLNA
GIWDGPAVLRRIRGPLLAQEMPSVSVLDYALPQRPPQAREEERDPSERALPRRSSSPVIG
SPPVRAVPIGTPPKQAAVPSFNQQILCPKPVHIRANMQQRYPAPYSERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAAPAPPPPSQPQPPPGPASHLQGLRPQPQMFRPDTTHLHPQHRRL
LHQRQQQNRNQHRSLNGSVGDRGGHRGSHQEQARKDPYANLMLQREKDWVSKIQMMQLQS
TDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLG
KLTVSSVNNPRKMIDAVVTSRGEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRY
LLSLEGERPALMGERKQKICDMYDNLRGKAPGQERPSDDHFMQIMCIRKGKRLVARILPF
LSPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLP
QSATAPAPTNLHLAAVLQNKFGLSLLYLVLSRGEELQNSDTSTELMQDNQWTELMLLASR
ELLRIPAAALAKPVSPPSNLLSLFSRYVDQQKLNLLETKLQ
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccccggaggagtgcccgctggacgaggaggaggacggcttccag
gcgctgggcgaggaggacgaggacatcgaccagttcaacgatgacaccttcggggccggt
gccgtcgacgacgactggcaggaggcccacgagcggctggcggagctggaggagaagccg
cggggcgcggggcagcgagccgtgccgggcggcgaggacgccgagctgctgggcgagccc
gaggacacgctggcggagcggctgacacggctggtgatcgacagcgagctggaggacccg
gccatcatgcgggccgtgcacaccagggcccccggcgcccagcctgccccgctcaacgcg
gggatctgggacggccccgccgtgctgcggcgcatccgcgggccgctgctcgctcaggag
atgccgtcggtgtccgtgctggactacgctctgcctcagagacccccgcaggctcgggag
gaagagagagacccctctgagcgggcgctgccccgccgctcgtcctcccctgtcatcggc
agccccccggtgcgagcggtccccatcggcacccctcccaagcaggcggccgtgcccagt
ttcaaccagcagatcctgtgcccgaagccagtgcacatccgggccaacatgcagcagcgc
taccccgctccctacagcgagaggatgtcccccaaccagctctgcaacgtaccgaactcc
tccctgctgggccacccgttcccccacagcgtctctcccgtcctcacccacctgcagaga
gcacagctgctgggaggagcccaggccggccgaatgtctcccagccagttcgcccgagtc
tcaggcctcgtggggagcccgctgccctccgtcaaccccaagctgctgcagggcagagtg
gggcagatgatgtctccagccggcggctttcgtgccttcttcggggctgccccagctccg
ccgcccccgtcgcagccgcagcccccgccgggccccgcttcccacctgcagggcttgagg
ccccagccgcagatgttccggccggacacgacccacctgcacccccagcaccgccggctc
ctgcaccagcggcagcagcagaaccgaaaccagcaccgcagcctcaacggctcggtgggg
gaccgagggggccaccggggcagccaccaggagcaggcacgcaaagacccctacgccaac
ctcatgctgcagcgggagaaggactgggtgtccaagatccagatgatgcagctgcagagc
actgacccctacctggacgactattactaccagaactacttccagaagctggaaaagttg
gcagcggctgaggaagtccacggggacggtcccaagaaggagcgcactaaactcatcacc
cctcaggtggccaagctggagcacgcctacaaaccagtgcagtttgagggctcgctcggg
aagctgacggtgtccagcgtgaacaacccgcggaagatgatcgacgcggtggtgacctcc
cgcggcgaggatgatgagacgaaggagaagcaggtccgggacaagcggcgccagacgctc
gtcaccatcgagaagacctacagcctcctcctggacgtggaggactacgagcgacgctac
ctcctgagcctggaaggcgagcggccggccctgatgggcgagaggaagcagaagatctgc
gatatgtacgacaatctgaggggcaaggcgcccgggcaggagaggccgagcgatgaccac
ttcatgcagatcatgtgcatccggaaaggaaagcgcctggtggcacgcatcctccccttc
ctgtcccccgagcaagcggccgacgtcctcatggcgacggccaggaacctgcccttcctc
atcaagaaggacgctcaggacgaggtgctgccctgcctgctgaggcccttctcgcacgtc
ctctaccacctccccctggggacggtcaccagccttgtgcagcagctcaccaacctacct
cagagcgccaccgcgccagcgcccaccaacctgcacctcgctgctgtgctgcaaaacaag
ttcggcctgtccctgctctacctggtgctgagccgcggggaggagctgcagaactcggac
accagcacggagctgatgcaggacaaccagtggacggagctgatgctgctggcgagccgg
gagctgctgcggatcccggcggccgccctggccaagccggtgtcccccccctccaacctg
ctctccctcttctctcgctacgtcgaccagcagaagctcaacctgctggagacaaagctg
cagtga
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