KEGG   Bucephala clangula (common goldeneye): 308445006
Entry
308445006         CDS       T11949                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
bcla  Bucephala clangula (common goldeneye)
Pathway
bcla03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:bcla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    308445006 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcla03400]
    308445006 (TDP1)
DNA repair and recombination proteins [BR:bcla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     308445006 (TDP1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 308445006
NCBI-ProteinID: XP_080807028
LinkDB
Position
7:47979253..48021413
AA seq 606 aa
MLQDGAHGKWTVSSSDESTEENSDSEKPSTSALLSAAPGKASGPQYPCSEARKAAHKRKA
SPVKFSDKSLAPETPPAEKQRATQEGLGWCLSSSDEEPEDREKSAPKKRLKEEKCDAPEE
LPPNHSKDEHSGNHKAEDYNEAPSEAQDTWDLLNGGNPFRFFLTKVTGIEQSYNSGALHI
KDILSPLFGTLVSSAQFNYCIDVEWLVRQYPQEFRKKPLLIVHGEKRESKAELLAQARPF
ENISFCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIADDWHQKTQGIWLSPLYPRL
PQGKAGSAGESETNFKSDLLSYLMAYNAPTLKEWVDVIQEHDLSETRVYLLGSTPGRYQG
IDKEKWGHLRLRKLLKEHASSVPAQESWPVVGQFSSIGSMGADESKWLCSEFQESLVAAG
SRATTLLKCDVPVHLVYPTVNNVRQSLEGYPAGGSLPYSIQTAQKQLWLHTYFHKWSAEV
SGRSHAMPHIKTYLRPSPDFKKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFL
PSAFGLDKGYFRVRGKTLSEGNDSATSFPVPFDLPPERYGSKDQPWIWNIPYTDAPDTHG
NMWVPS
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgcttcaggatggcgcgcacggcaaatggacagtgtcgagcagcgatgagagcaccgag
gagaactcggacagcgagaagccctccacgtctgcgctgctcagcgccgcaccgggcaaa
gccagcgggccccagtacccctgctccgaagccaggaaggctgcgcacaagagaaaagct
tctccggtgaagttcagcgataaaagtctcgctccagaaacacctcccgcagagaaacag
agagcgacccaggaaggcttgggctggtgtctttccagtagcgatgaagagcccgaagac
cgagaaaagagtgccccaaaaaaaaggctgaaagaagaaaagtgtgatgcccccgaagaa
ctgcctccaaatcatagcaaagacgagcactcggggaatcataaagcagaggactataac
gaagcacccagtgaagcccaggatacctgggatttgctgaatggagggaaccctttcagg
ttttttctcactaaagtcacgggaattgagcagagctataattctggagccttgcacata
aaagatattttgtctcctctttttgggactcttgtatcttctgctcagtttaactactgc
atagatgtggaatggctcgttagacagtatccacaggaattcaggaagaagccattgttg
atagttcatggtgagaagagggaatccaaagctgaactgcttgcacaagcacgccctttt
gaaaacattagtttctgtcaggctaaactggatattgcatttggaactcaccacacgaaa
atgatgctgttgttatatgaagaaggtcttcgggttgtgatacatacatccaatcttatt
gctgatgactggcatcagaaaactcagggaatatggctaagccctttatatccaaggcta
cctcagggaaaagctggttctgctggtgaatctgaaactaattttaaatctgacctgtta
agttacttgatggcttacaatgctcctacactcaaggaatgggtagatgtgattcaagaa
catgacttatcagagacaagagtttatctgcttggttctactcctggacgatatcaaggt
attgataaagaaaagtggggtcatcttaggctcagaaagcttttgaaagaacatgcttca
tcagtaccagcacaggagtcttggcctgttgttggacagttctcaagcattggatcaatg
ggagctgatgagtccaaatggctgtgctctgagttccaggagagtctggtggctgcaggc
agcagagcgacaactctccttaaatgtgatgttcctgtccatttggtttatcctactgtg
aacaatgtgaggcaaagtctggaaggctatcctgctggtggctcccttccatacagtata
cagacagcgcagaaacagctgtggttgcatacttattttcacaaatggtcagcagaagtc
tcaggtcgaagtcatgctatgcctcacattaagacgtatttgagaccctctcctgacttc
aaaaagattgcatggtttttagttacaagtgccaatctatctaaagcagcgtggggagct
ttggagaaaaatggcacccagctgatgatacgctcatatgaacttggagtccttttcttg
ccttcagcatttggtttggacaaaggttacttccgtgtgagagggaaaacactttcagaa
ggtaatgattcagcaacgtcttttcctgtaccttttgacctgccaccagaacggtatgga
agcaaagatcaaccatggatttggaatattccttacactgatgcccctgatacacatgga
aacatgtgggttccatcgtga

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