Bucephala clangula (common goldeneye): 308445440
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Entry
308445440 CDS
T11949
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform 1
KO
K12821
pre-mRNA-processing factor 40
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308445440 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bcla03041
]
308445440 (PRPF40A)
Spliceosome [BR:
bcla03041
]
Complex A
U1 snRNP components
U1 related factors
308445440 (PRPF40A)
Complex B
308445440 (PRPF40A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
308445440
NCBI-ProteinID:
XP_080807701
LinkDB
All DBs
Position
8:complement(38489679..38510712)
Genome browser
AA seq
1024 aa
AA seq
DB search
MSGGDSAAAAAAASPQPLPFSLPKPPPLMQLTPGDAVRPVAAAAADQSPKGSRLAGRPDW
PAGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCGGGSLLSPAMRPGAVDRGS
LMMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGM
MMSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTATTNSSV
NEEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSG
KPYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEESTAAASATGEAANATTTATTAA
ETAAAVTTTTTAATAASEGETAAASGTENESTAAATAEEQGQQATSAPAAQEQSAEAAAN
AADDSSKQEGSADASSKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQA
MKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMT
STTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNIL
DNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQK
SLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPVFSSG
STALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDA
GNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRF
VKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSES
EDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIERDK
DKKERERESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQL
DEDQ
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcggcgactcggcggcggcggcggccgcggcctcccctcagccgctgcccttt
tcgctgcccaagccgccccccctcatgcagctgacgccgggggacgccgtccggcccgtg
gccgccgccgccgccgaccaatcgccgaagggcagccggctggcgggccgccccgattgg
ccggccggcaagcccgtcagcctgctggcgccgctgctcccgccccgcggcgagcccgag
ccgctgatgcccttcgggccctcctcacggcagccgctgcggggccggctgctgggcagg
tgcggcgggggcagcctgctcagccccgccatgcggcccggcgcggtggaccgcgggtcg
ctgatgatgggacacccagggatgccacattacccgcccatgggaatgcaccccatgggg
cagaggccaccgaatatgccgccggttccgcatggtatgatgcctcagatgatgcctccc
atgggaggaccgccgatggggcagatgcctggaatgatgcagtcagtaatgcctggaatg
atgatgtcccacatgtcccaagctgctatgcagcctacagttccgccaggggtgaacagc
atggacgcacaagtaggtgtaacgccacctggaactcagagctctgttttgtttcgccct
cagacaacacatcctgtagtttgtgcagctcagcaaaccgccacaaccaacagttctgtt
aatgaagagcactctaaacagaaatccacgtggacagagcacaaatcacctgatggaaga
acatactactacaatactgaaacaaagcagtccacgtgggagaagccagatgatctcaaa
acaccagctgagcaattgttgtcaaagtgtccctggaaagagtacaaatctgattctgga
aagccatactactataattcccaaacaaaggaatcacgctgggcaaaacccaaagaactt
gaagatcttgaagcaatgattaaagcagaagaaaacagcaccaagcctgaagagtcgact
gcagcagcatctgctacaggagaagcagcaaatgcaaccaccacagccacaactgctgcc
gaaaccgcagcagctgtcaccaccaccactactgcagcgacagcagcctctgaaggagaa
actgctgcagcttctgggacagaaaatgagagtactgccgcagccacagcagaggaacag
ggacagcaagcaacttctgcacctgctgcacaggaacagagtgcagaagctgcagctaat
gcagcggatgattcttccaagcaggagggttcagcagatgcttcttcaaagaaagaggac
gatgatgcacagccagttaaaaaaacctatacatggaatacaaaggaagaagcaaagcaa
gcatttaaagaactcctgaaagaaaagagagtaccatctaatgcatcctgggagcaagct
atgaaaatgatcattaatgatcctagatacagtgctttggcaaagttgagtgaaaaaaag
caagcctttaatgcttacaaagttcaaacagaaaaagaagaaaaagaagaagcaagatca
aaatacaaagaagctaaagaatccttccagcgttttcttgaaaaccatgaaaagatgaca
tccacaacaagatacaaaaaagctgaacaaatgtttggggagatggaagtctggaatgca
atatctgagcgtgatcgtcttgaaatttatgaggatgtcctcttttttctgtctaagaaa
gagaaggaacaagccaaacagttgcgaaagaggaattgggaagcgttaaagaacatacta
gataacatggctaatgtcacttactgcactacgtggtcagaggctcagcagtatctgatg
gacaatcctacgtttgcagaagacgaggaacttcagaatatggataaggaagatgcgctg
atctgttttgaagaacatatcagggcactggaaaaagaggaggaagaagaaaaacagaaa
agcttgcttagagaaagaaggcggcagcgtaaaaatagagaatcttttcagatattttta
gatgaacttcatgagcatggacaattacattcaatgtcctcttggatggagttgtaccca
accataagctctgacatcagattcactaatatgcttggtcaacctgttttttcatcagga
tcaacagcacttgatcttttcaagttctatgttgaagacttaaaagcacgttaccatgat
gaaaagaagataataaaagatatcttaaaggataaaggatttgtggttgaagtgaacact
tcttttgaagactttgttacggtcatcagttcaactaaacgagctacaactttagatgca
ggaaatatcaagctggctttcaatagtctgctagaaaaggcagaagcccgtgaaagagag
agggaaaaagaagaagctcgtaaaatgaagcggaaagagtctgccttcaagagtatgttg
aaacaagctactcctccgattgaattggatgctgtctgggaagatatcagagatagattt
gtgaaggagccagcatttgaagacatcactctagagtccgaaagaaaaagaatatttaaa
gatttcatgcatgtactagagcacgagtgtcagcaccatcattcaaagaacaagaaacat
tctaaaaagtctaaaaaacatcacaggaagcggtctcgctctcgttcgggctcagagtct
gaggatgatgatagtcattcaaagaagaaaaggcaacggtcagaatctagatctgtgtct
gagcgttcttccagtgcagaatctgagagaagttacaagaagtcaaaaaagcacaagaaa
aagagcaagaagagaagacataagtctgattcaccagaatcagatattgaacgagacaaa
gacaaaaaagaaagagagagagaaagtgaaaaggatagagctagacaaagatctgaatca
aaacataaatctccgactaaaaaacgacctggaaaagattctggtaactgggatacttca
ggcagtgaactgagcgaaggggagctggaaaaacagaggcggactcttttggaacaactg
gatgaagatcaatga
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