Bucephala clangula (common goldeneye): 308445598
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Entry
308445598 CDS
T11949
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
bcla Bucephala clangula (common goldeneye)
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bcla04147
]
308445598 (COL18A1)
00535 Proteoglycans [BR:
bcla00535
]
308445598 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
bcla00536
]
308445598 (COL18A1)
Exosome [BR:
bcla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
308445598 (COL18A1)
Proteoglycans [BR:
bcla00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
308445598 (COL18A1)
Glycosaminoglycan binding proteins [BR:
bcla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308445598 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
308445598
NCBI-ProteinID:
XP_080807971
LinkDB
All DBs
Position
8:11413814..>11429114
Genome browser
AA seq
1488 aa
AA seq
DB search
MAPHRLGLLLLLASCCFSSSEAQLLDWIWGSPKTTGSPVAPSTAAAASRLAEPSPTPSTP
PGTAAQRQDPAAGDPTATTQQHQEQDPSTAVPTGRESAEGTEQWDRSSAGIAAPTSVART
AAPPSGTPPAQLPAGTGHPDATQPPRQPEGTGVSPQKPAAARPENLSAEVSLLELIGDPP
PEEILKIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVT
DSSQSIIYVGVKLSDLQAGKQRIIFYYTEPGSPSSYAAATFTVPTLLNQWTRFAISVEED
EVVLYLDCEEYERVRFERSPDEMELEQGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAA
EHQCEEEEDDAEASGDFGSGAEDRRQPSGKDGGVPGLVDAVPVTSPPVAADGGSGRSSGS
PQQAERTRAEERLRAPAGGNGPKGEKGEKGERGLKGDSGTGGVLGTGSTKGEKGQKGELG
IKGSAGFGYPGSKGQKGEPGEPGPPSRHSDGAVLEPVTGPPGPSGPPGLPGKEGAPGRDG
EPGDPGEDGKPGVMGPQGFPGTPGEPGMKGEKGDPGVGPRGPPGLPGPPGPPGPSSKQDR
LTFIDMEGSGFGGDLETVRGPRGPPGPPGPPGVPGLPGEPGRFGMNSTDLPGPPGLPGRD
GVPGTPGPEGPQGPPGKDGMPGPPGPKGERGDVGDLGLPGAPGPKGSKGDTGPAGAPGEM
GLAGLPGPIGPRGPPGPPGPPGLPGPAYEAGFADMEGSGLPLTAGSPGPRGPDGPQGVPG
LPGIKGEVGSPGQPGVPGPKGDAGVPGVDGRPGLEGFPGPQGPKGDRGSPGEKGERGQDG
VGLPGPPGPPGPPGQVVYVSGEDRSLAAVPGPEGRPGHAGFPGPVGPKGDQGSPGLQGSP
GLKGEKGEPGVIISPDGTIVAANVKGEKGEPGLRGPMGPSGPHGRAGLKGEIGFPGRPGR
PGMNGLKGEKGDPADISGMLGLRGPPGPPGPPGPPGPPGSIVYDSTNAFSDASRPALPAF
PGFHQFPGQKGEKGDVGAPGPPGQFPYDLSHFSASLRGDKGEAGPKGEKGEPGGTALYGP
SVMGPPGPQGYPGLPGPKGDSIIGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGP
HRPAISIPGPPGPPGPPGPPGSSGMSLGLRALPTYQAMLSAAHELPEGGLVFLADRQELY
VRLRGGFRRVLLEEHTLVPSSALDNEVYDKPPSVHYGGSQHPLQPRGPLHPLRNHSPPPT
ARPWRGDEVVANQHRLPQPPLLQQHELLNSYYVQRRPEPAPVAAHVHQDFQPALHLVALN
APLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIVRRADRATVPIVNLRD
EVLFSNWEALFTGSEAPLRADARILSFDGRDVLRDSAWPQKSVWHGSDARGRRLPESYCE
AWRTEERGTSGQASSLSSGKLLEQAASSCQHAFIVLCIENSFMTAAKK
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atggctccacaccgcctggggctgttgctgctgctggcttcctgctgcttctcctcctcc
gaggcgcagctcctggactggatctggggcagcccgaaaaccacaggaagccctgtggca
cccagcactgcagccgccgcctcccggctggcagagccatcgcccaccccgagcacaccc
ccggggacggcagcacagcggcaagaccctgcggcaggggaccctacggccaccacgcag
cagcaccaggagcaggaccccagcacggcagtgcccacgggccgggagagcgcggagggc
accgagcagtgggacaggagctctgcgggcatcgcggcgccgacgagcgtggcgcggacg
gccgctccccccagcggcacgccacccgcccagctccccgcagggacggggcaccccgat
gcgacgcagccgccccggcagcccgaggggacgggggtgtccccgcagaagccggcggcc
gcccgcccagagaacctgagcgccgaggtcagcctcctggagctgatcggagaccccccg
ccggaggagatcctcaaaatctacggccccgacaacaaccccggctatgtcttcggaccc
aacgccaacacgggccaggtggctcgctaccacctgcccagccccttctaccgggacttc
tctctcctcttccacatccagcccaccaccccccgggctggtgtcctctttgccgtcacg
gactcctcgcagagcatcatctacgtgggcgtcaagctctcggacctgcaggcgggcaag
cagcgcatcatcttctactacacggagccgggctcgccgagctcctacgcggcggccacc
ttcaccgtgcccacgctgctcaaccagtggacgcgcttcgccatcagcgtggaggaggac
gaagtcgtcctctacctggactgcgaggagtacgagcgggtgcgcttcgagcgctccccg
gatgagatggagctggaacaaggctccgggctcttcgttgctcaagccgggggagccgac
cccgataaataccagggtgtgatcgccgacctgaagctccgaggggacccgcgggcggcc
gagcaccagtgcgaggaggaggaggacgacgccgaggcatctggagatttcggcagcggg
gcagaggacaggcgccagccctcggggaaggacgggggtgtcccggggctggtggatgcc
gtccccgtcacctccccgcccgtggcagcggacggcgggtcgggaaggagttcgggctcc
ccacagcaggcggagaggaccagagcggaggagaggctgcgggcccctgcaggaggtaac
ggccccaaaggagaaaaaggggagaagggcgaacgtggcctgaaaggggactcggggacc
ggtggcgtcttggggacgggcagcaccaagggggagaaggggcaaaaaggtgaactgggc
atcaagggcagcgctggctttggctatcccggctccaagggccagaaaggcgagcccgga
gagcccggccccccctcgcggcacagcgacggcgcagtgctggagccagtcaccggcccc
cccggcccctccggccccccggggctgccggggaaggaaggggcccccggcagggacggc
gagcccggcgatcccggcgaggacggcaaacccggtgtgatggggccccaggggttcccc
gggacaccaggagagcccgggatgaagggggagaagggtgaccccggtgtggggccaagg
ggccctccaggactgccaggtccccccggaccaccgggaccctcctccaagcaggacagg
ctgacgttcatcgacatggagggctccgggtttggcggcgacctggagaccgtgcggggc
ccacgagggccacccggacctccggggccccctggcgtgcctggcttgccaggggagccg
ggacggtttgggatgaacagcacagacctgccaggaccaccggggctgcccggcagggat
ggggtccccgggaccccggggccggagggtcctcagggtcctcctggaaaagacgggatg
ccagggccaccagggcccaaaggagagcggggtgacgtgggtgacctcggcctccccgga
gcaccaggacccaagggcagcaagggggacacggggccagcaggcgccccaggagagatg
ggcttagccggcctccccgggcccatcggaccccgagggccgccaggcccccctggccca
ccggggctaccggggccggcgtacgaggctggatttgccgacatggagggctcggggctg
ccgctcaccgccggctcccctgggccacgggggcccgatggacctcagggcgtgccagga
ctgccggggatcaagggggaggtcggcagccccgggcagcccggtgtgccgggacccaag
ggggacgctggcgtgcccggcgtggacggccgccccggcctggagggcttccccggaccg
cagggacccaaaggtgacagaggcagcccgggtgagaagggcgagcgaggccaagatgga
gtggggctgcccggcccccccggcccgcctgggccccccggacaggtcgtctacgtctcg
ggtgaagataggtctttggcggctgtgccgggcccagagggcagaccggggcacgccggc
ttcccgggcccggtgggaccaaaaggggaccagggctcgcctggcttgcagggctcgccg
gggctgaagggagagaagggagagcccggcgtcatcattagcccggacgggaccatcgtt
gctgctaacgtgaaaggagaaaagggggagcccgggctgcggggaccgatgggcccgtct
ggcccccacggacgagcagggctgaagggagaaatcggctttccgggcagacccgggcgt
cccggcatgaacgggctgaagggcgagaagggcgacccggcggacatcagcggcatgctg
ggcctgcggggcccccctggtcccccaggtccccccggccctcccggccctcctggcagc
atcgtgtacgacagcaccaacgctttcagcgacgccagccgccctgcgctgccggccttc
ccgggtttccaccagtttccagggcaaaagggagagaaaggagacgtgggtgccccgggg
cccccaggccagttcccctacgacctgagccacttcagtgccagcctgcggggtgacaag
ggggaggcaggtcccaagggcgagaagggcgagccgggcggcaccgctctgtatggcccc
agcgtcatggggccaccagggccacagggctacccgggcctgccgggtcccaagggggac
agcatcattgggccaccggggcctcccggaccgcagggaccccccggcatcggatacgag
gggcggcagggccctcctggccctcccggcccccccgggccgccctccttcccaggcccc
cacagaccagctatcagcatccccggcccccccggaccaccggggccccctggcccgccg
ggcagcagcgggatgtccctggggctgcgcgcccttcccacctaccaggccatgctgagc
gccgcgcacgagctgcccgagggggggctcgtcttcctggccgaccggcaggagctctac
gtccgcctgcgcgggggcttccgcagggtgctgctggaggagcacaccctggtccccagc
tcggcgctggacaacgaggtgtacgacaagccgcccagcgtccactacggggggtcccag
caccctctgcagccccgcgggcccctgcaccccctgcgcaaccacagcccgccgcccacc
gcccggccgtggcgcggggacgaggtggtggccaaccagcaccgcctgccccagccgccc
ctgctgcagcagcacgagctcctcaacagctactacgtccagcgccgcccggagccagcc
cccgtggccgcccacgtgcaccaggatttccagcctgctctgcacctcgtggccctcaac
gcgccgctgagcggcggcatgcgcggcatccgcggcgccgacttccagtgcttccagcag
gcccggcaggtggggctggccggcaccttccgcgccttcctctcctcccgcctgcaggac
ctctacagcatcgtgcgcagggccgaccgtgccaccgtgcccatcgttaacctgcgggac
gaggtgctcttcagtaactgggaggctctcttcaccggcagcgaggccccgctgcgggct
gatgcccgcatcctctccttcgatggccgggacgtcctgcgggattcggcgtggccgcag
aaaagcgtctggcacggctcggacgccaggggccggcgcctgcccgagagctactgcgag
gcgtggcggacggaggagcgcggcaccagcgggcaggcctcctcgctgagctcaggcaag
ctcctggagcaggcggccagcagctgccagcacgccttcatcgtcctctgcatcgagaac
agcttcatgaccgctgccaaaaaatga
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