Bucephala clangula (common goldeneye): 308450579
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Entry
308450579 CDS
T11949
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5
KO
K13174
THO complex subunit 5
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla03013
Nucleocytoplasmic transport
bcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308450579 (THOC5)
09122 Translation
03013 Nucleocytoplasmic transport
308450579 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcla03019
]
308450579 (THOC5)
03041 Spliceosome [BR:
bcla03041
]
308450579 (THOC5)
Messenger RNA biogenesis [BR:
bcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
308450579 (THOC5)
Spliceosome [BR:
bcla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
308450579 (THOC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
308450579
NCBI-ProteinID:
XP_080816875
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All DBs
Position
19:6037994..6047199
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AA seq
683 aa
AA seq
DB search
MASEAGKKRKPKVIRTDGAPPEGKRGKADGEQDARYYSEECEVDMRDPIKDYELYKETCQ
ELQRLMAEIQELKSRGIKDNASEIDERRVQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSLEEFYSEAPTEISRPDITL
TEPHQQTLARLDWELEQRKRLAERYKECLTIKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQASAYGQACDKKLVVAIEGSVEEAKAL
YKPPEDSQDDESDSDVEEEQTTKRRRPTLGVQLDDKRKEMLKRHPLCVTIDLKCKDDNVL
HLTFYYLMNLNVMTVKAKVTTAVEMTTAISAGDLLSPDSLLSCLYPGDHGKKTPNPANQF
QFDKVGIVTLSDYVTELGHPYVWVQKLGGLHFPKDQPQHTVTADNSLSASHMELTVKLLR
TRLQSRLALHKQFASLEHGVVPVSSECQHLFPTKIVSRLVKWSAIPFEDYAELPYTKDVL
EAGLAEDTHLYYMALIERGTAKLQAAVVLNPGYSALPPIFSLCLNWKGERTGNNDDNIRA
MESEVNVCYKELWGPKPGYQLLTNQLQRLCMVLDVYLETEPHDTSVEGPKEFPQEKMCLR
LVRGPMRLKPFKFNYPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgaggctggcaagaagcggaaacccaaagtgatccgcaccgacggggccccg
ccggagggcaagcgcggcaaggcggacggcgagcaggatgcccggtactacagcgaggag
tgcgaggtggatatgcgagaccccatcaaggactacgagctgtacaaggagacctgccag
gagctgcagcgcctcatggcggagatccaggagctgaagagccgcggcatcaaggacaac
gcctccgagatcgacgagcggcgcgtgcagagctgcgtgcacttcatgaccctgaagaag
ctgaaccgcctggcgcacatccgcctgaagaaggggcgagaccagacccacgaggcgaag
cagaaggtcgacgcctaccacctgcagctccagaacctgctgtacgaggtgatgcacctg
cagaaagagatcaccaagtgcttggagttcaagtcgaagcacgaggagattgagctggtc
agcctggaggagttctacagcgaggcccccaccgaaatcagccggccggacatcaccctg
accgagccccaccagcagaccctcgcccgcctcgactgggagctggagcagcgcaagagg
ctggcagagaggtacaaggagtgcctgaccatcaaggaaaagatcctgaaggagatcgag
gtgaagaaggagtacctgagcagcctgcagcctcgcctcaacagcatcatgcaggcctcc
ctgcccgtgcaggagtacctcttcatgcccttcgaccaggcgcacaagcagtacgagaca
gcccgccacctgccgccgcccctctacgtcctcttcgtccaagccagcgcctacgggcag
gcctgcgacaagaagctcgtcgtggctatcgaaggcagcgtggaggaagccaaagccctg
tacaagccgcccgaggactcgcaggatgacgagagcgactcggacgtggaggaggagcag
accacgaagcggcgccggcccacgctgggcgtgcagctggacgacaagcgcaaggagatg
ctgaagcggcacccgctgtgcgtcaccatcgacctcaagtgtaaagatgacaacgtgctg
cacctgaccttctactacctgatgaacctcaacgtcatgacggtgaaggccaaggtgacc
actgccgtcgagatgacgaccgccatcagcgctggtgacctgctgtccccggactccctc
ctgagctgcctgtacccgggagaccacgggaagaagacccccaaccccgccaaccagttc
cagttcgacaaagtgggcatcgtcaccttgagcgactacgtgacggagctggggcacccc
tacgtctgggtgcagaagctgggcggcctgcacttccccaaggaccagcctcagcacacg
gtcaccgccgacaactcgctgagtgccagccacatggagctgacggtgaagctgctgcgg
acgaggctgcagtcccgcctggccctgcacaagcagtttgcctctctggagcacggcgtg
gtgccggtctccagcgagtgccagcatctcttccccaccaagatcgtctcgcgcctggtg
aagtggagtgccatccccttcgaggactacgcggagctgccctacactaaagatgtgctg
gaggctggcctggccgaggacacgcacctctattacatggccctgatagaaaggggcaca
gccaagctccaggccgctgtggtcctgaaccccggctactcggcgctgccgcccatcttc
agcctctgcctgaactggaaaggagagcgaaccggcaacaacgacgacaacattcgggcg
atggagagcgaggtcaacgtgtgctacaaggagctgtgggggcccaaacccggctaccag
ctcctcaccaaccagctgcaacgcctctgcatggtgctggacgtctacctggagacggag
ccccacgacaccagcgtggaggggcccaaggagtttccccaggagaaaatgtgtctgcgc
ctggtcaggggccccatgcgcttgaagcccttcaagttcaactacccacagggcttcttc
agccaccgctga
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integrated database retrieval system
