Bucephala clangula (common goldeneye): 308451511
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Entry
308451511 CDS
T11949
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
bcla Bucephala clangula (common goldeneye)
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcla03019
]
308451511 (SMG8)
Messenger RNA biogenesis [BR:
bcla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
308451511 (SMG8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
308451511
NCBI-ProteinID:
XP_080818582
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All DBs
Position
22:complement(3555754..3562571)
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AA seq
969 aa
AA seq
DB search
MPLPGPVSLRELLLAAAAGAEGSGGAAAAAGPGPAPSSPGEEEVCVVGIFGKTALQLCSE
KAALVSTVCDRQVFPLFEPADPEEAGDAAGTEGEPAAKDYNDLQAYYSQESRVLYLVLTS
ICDTPQLLKACGDLAAAESRESAAGGPGPLPHAEAHEFWKHQEKLHCLSLLYLFSVCHIL
LLVHPTCSFDITYDRVFRALDGLRQKVLPSLKAAIKDCPVGKEWKLNCRPCPPRLLFLFQ
LNGALKVDPLPSRGQDPCGHLEKPPPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINC
LFTVPANQAFVYIVAGGAQDGEDPVAMLLDQLRSNCTMRETDSLLAPTLSGPRRYQMMRH
GRQQLSFYAESSSSSSSSSGQLVDCTLKEFLWQHVELVLSKKGFDDSVGRNPQPSHFELP
TYQKWVAAALKLYEVTIEGKDDDPTSLTGELSSKIMGSIKVLEGYLDIDTKFSENRCQKA
LPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLNEDCYKFWSNGH
QLCEERSLTDQHCVHKFHLLPKAGEKPEADRNPPILYHNSRARSTGACNCGRKQAPRDDP
FDIKAANYDFYQLLEEKCCGKLEHINFPVFQPSTPDPAPARDESSPAPPEGEIEKLKEKE
PQTQGESTGLSLALSLGQSTGSLGTYPPDAQAGGDNAESHGQSGDSKSEKRPSLVDRQAS
TVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKAYNFHTGLDQQGFIPGTNYLMPWDIVI
RTRTEDEGDLDTNSWPAPNKAVPAKRSSVVMGRGRRRDDIARAFVGFEYEDARGRRFMCS
GPDKVMKVMGGGPKESAIKALNSDMPLYILSSTQGRGLKPHYAQFMRLFVVVPDAPLQIT
LTPQVQPGPPPCPVFYPEKQEITLPADGLWVLRFPYAYVTERGPCFPPKESQQLMSYKVL
RGILKAITQ
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgccggggccggtgagcctgcgggagctgctgctggcggccgcggccggcgcc
gaggggagcggcggggcggcggcggctgcggggccggggccggccccttcgtcccccggc
gaagaggaggtgtgcgtggtcggcatcttcgggaagaccgcgctgcagctgtgctccgag
aaggcggccctggtgagcaccgtgtgcgaccggcaggtcttccccctcttcgagccggcc
gaccccgaggaggctggagacgctgccgggacggagggcgagccggcggccaaggactac
aacgatctgcaggcgtactacagccaggagagcagggtgctctacctggtgctcacctcc
atctgcgacacgccgcagctgctgaaggcctgcggggacctggcggctgcagagagcagg
gagagcgcggctggaggccccgggccgctgccccacgccgaggctcacgagttctggaag
caccaggagaagctgcactgcctgagcctcctctacctcttctccgtctgtcatatcctg
ctgctggtacaccccacctgctcctttgacatcacctatgaccgcgtcttcagggcgctg
gacgggctgcggcagaaggtgctgccctccctgaaggctgccatcaaggactgcccggtc
ggcaaggagtggaagctgaactgcaggccctgcccgccgcgcctcctcttccttttccag
ctcaacggggccctgaaggtggatcccctcccgagcaggggccaggacccctgcggccac
ctggaaaagccgccccccaagaagcactccccaaagcggaggttgcagcatgccttggag
gatcagatctaccgcatcttccgcaagagcagggtgctgaccaaccagagcatcaactgc
ctcttcaccgtgcccgccaaccaggccttcgtgtacatcgtggctgggggggcccaggac
ggcgaggatcccgtggccatgctgctcgatcagctcaggagcaactgcaccatgagggag
acggactcgctgctggctcccacgctgtcgggacccaggaggtatcagatgatgcgccac
ggcaggcagcagctgtccttctacgcggagagcagcagcagcagctccagctcctctggg
cagctggtggactgcaccctcaaggagttcttgtggcagcacgtggagctggtgctcagc
aagaagggctttgacgacagcgtggggaggaacccgcagccctctcactttgagctcccg
acctaccagaagtgggtcgctgcggctttgaagctgtatgaagtgaccatcgaaggcaaa
gacgacgacccgacttctctcaccggggaactgagctccaaaatcatgggcagcatcaaa
gtcttggaaggctatttagacatagacaccaaattctctgaaaaccgttgccagaaagcg
ctccccatggcccacagcgcttatcagtccaacctgccccacaactacaccatgacagtc
cacaagaaccagctggcgcaggccctgcgcgtgtacagccagcacgcgcgcggcccggcc
ttccacaagtacgccatgcagcttaacgaggactgttacaagttctggagcaacgggcac
cagctgtgcgaggagcgcagcctaactgaccagcactgcgtgcacaagtttcatctgctc
ccaaaagcaggtgagaagccagaagcagacagaaatcctccaatcctgtaccacaacagc
cgggctcgttccactggtgcctgcaactgtggaaggaaacaagctcctcgggacgacccc
tttgatatcaaagcagcaaattacgacttttaccagcttctggaagaaaaatgctgtggg
aaactggagcacatcaattttcctgtgtttcagccaagcacccctgatccagcacctgct
agggacgagtcctcgcctgcccctccggaaggcgagatcgagaaactaaaagaaaaagaa
cctcagactcagggagaaagcacaggtctgagcttggccctcagcctgggtcagtcgacg
ggcagcttgggcacgtacccgcctgacgcccaggctggaggggacaatgccgaaagccac
gggcagagtggggactccaaaagtgagaaaaggccgagcctggtagatcgtcaggcatcc
actgtcgagtacctccctgggatgctccattccaactgccccaagggccttttgcccaaa
ttctccagttggtcactggtgaagctggggcctgctaaggcttataactttcacacgggc
ctagaccaacaaggctttatcccgggaacaaactatttaatgccttgggacattgtcatc
aggacgagaactgaagatgaaggagatttagataccaactcttggcctgcacctaacaag
gccgtccctgcgaaaagaagctcagttgtgatgggaagagggagacggagagatgacatc
gctcgagcttttgtaggatttgaatatgaagatgcacgtggcaggaggttcatgtgttca
ggacctgataaggtcatgaaggtgatgggcggggggccgaaggaatccgccatcaaagcc
ctcaattccgacatgccgctctacatcctgtcatcgactcagggacgagggctcaagcca
cattacgcccagttcatgagactctttgtggtggttccagatgctccactgcaaataacg
ctaacgcctcaggttcagccagggccaccaccttgccctgtattttaccctgagaaacag
gaaataacccttccagctgatggactctgggtgcttagatttccttatgcgtacgtgaca
gaacgtggaccctgctttcctccaaaagaaagccaacaattaatgagttacaaagttctt
cgaggaatactgaaagcgattacacagtaa
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