Bucephala clangula (common goldeneye): 308453147
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Entry
308453147 CDS
T11949
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bcla
Bucephala clangula (common goldeneye)
Pathway
bcla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308453147 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bcla03041
]
308453147 (DDX42)
Enzymes [BR:
bcla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308453147 (DDX42)
Spliceosome [BR:
bcla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
308453147 (DDX42)
Complex B
308453147 (DDX42)
Complex C
U2 SnRNP specific factors
308453147 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
308453147
NCBI-ProteinID:
XP_080821151
LinkDB
All DBs
Position
27:3439876..3457693
Genome browser
AA seq
945 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNSANPDSPIAAAAAAKGVPGFTSTGNLSSVPT
FPSVGVQGYNNTTTNASTNNREGIGSTGTGVAPGGGGGGGGSGVVRERYNDSRNSRHNEV
PRRGEGGGGRYNDVQRHGEGGGRHSDAYRHGEGRHGDNHRHAESRHFTDGSGGNRNNGES
RNIGEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtacaaagagaggctttggttttggtggatttgcc
ataacgcctggaaagaaagaggagcccaagctttctcaacagtctcatagtgcttttgga
acagccggttcctctgctgcatttgcgaaatcgggacctccacagctgccttcgttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtactttgaggatgaagag
gaagataacagcaatgtcgacttgccatacattccagcggagaattcccccactcgccag
cagtttcattccaaatcggcagactctgacagcgacgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaggaa
aaaaagaatgctaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccctactgctggtgtggtacaagaagaggaagaggataac
ctcgagtatgacagtgatgggaacccaattgcaccgtccaaaaaaatcattgatcccctt
ccacctattgaccattcagagattgaatatccaccttttgagaaaaatttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataagctaaat
ctccgggtctccggtgctgctcctccaagacctggcagtagctttgctcattttggattt
gatgagcaacttatgcatcaaattaggaaatccgagtatacccagcccactcctatacag
tgccagggtgttccagttgcactgagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggcctatgttgattcacatcatggatcaaaaagag
cttgaaccaggggacggtcccattgcagtgattgtatgcccgaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcatataatctgcgctcagtagctgtg
tatggaggaggaagcatgtgggaacaagccaaagccctccaggagggggcagagatagtt
gtttgcacaccgggtcgtttgattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgatgaagcagacagaatgtttgatatgggttttgaatatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccact
tttcgtaagaagattgagaaattggcccgagatattctgattgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagattttcccttct
ggccctagcaaatggaactggctgactcgccgccttgtggagttcacatcttctgggagc
gttctcctttttgtcaccaagaaggcgaatgcagaagagctggctaataacctcaagcag
gaggatcataatctagggctgcttcatggcgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaaagggatcccgatactggtagctactgatgtagcagctcgt
gggttggatattccttccattaagactgtgatcaattatgatgtggctcgggacatagac
acgcacacccacagaattggtcgtactggcagagcaggcgagaagggagttgcctacact
ctgttgactcccaaagacagtaacttcgctggtgatctcgtccgaaatctggaaggtgct
aatcaacatgtttccaaagagctgttggatctagcaatgcagaatccatggttccggaaa
tcccgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatat
cgtgagcgtcctggtctgggatcagaaagctctgaccgtggaaacaacaacagtgtgatg
agcaactacgaagcatataaaccatcctctggggcaatgggcgacagacttacagcaatg
aaagcagcttttcagtctcagtataagagccactttgttgctgcaagcttaaataatcaa
aagactggaagctctgctgctggtgctagtggctggactagtgctgggagcttgaactca
gtaccaacaagttcagcacagcaaaattctgcaaatcccgacagcccgattgcagctgcc
gcagcagccaagggtgtcccaggtttcaccagcaccgggaatctgagtagtgttcccacc
ttcccaagcgtcggagtacagggctacaacaacaccaccacgaatgccagcaccaataat
cgagaaggcatcggcagcaccggcaccggcgtcgctcctggtggcggtggtggcggcggc
ggcagtggcgttgtcagagaacgatacaacgacagcaggaacagtcggcacaacgaggtc
ccgcgccggggagagggcggtggcggtcgctacaacgacgtgcagcgccacggggaagga
gggggccgccacagtgacgcttaccggcacggggagggccggcacggcgacaaccatcgc
cacgctgaaagccggcatttcactgacgggagcggtggcaatcgcaataatggtgagagc
aggaatatcggcgagggtaggaacaacgagaacaggaatggtgagaacaggaaggatgcc
aacagccgggacaacaagacagatggttttgctgtcccggagcccccaaaacgtaagaag
agtcgatgggacagttaa
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