Bucephala clangula (common goldeneye): 308453837
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Entry
308453837 CDS
T11949
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla04510
Focal adhesion
bcla04512
ECM-receptor interaction
bcla04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
308453837 (COL2A1)
04518 Integrin signaling
308453837 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
308453837 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bcla00536
]
308453837 (COL2A1)
Glycosaminoglycan binding proteins [BR:
bcla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308453837 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
308453837
NCBI-ProteinID:
XP_080822202
LinkDB
All DBs
Position
30:<2326136..>2345467
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AA seq
1485 aa
AA seq
DB search
MTVTMMMVMKVTMVTVTAAVAAEPRGGQTEAGGGCVQDGQSYSDKDVWKPEPCRICVCDT
GTVLCDEIICEELRDCPSPEIPFGECCPICPAEPPAATARQPGPKGQKGEPGDIKDVVGP
RGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPAPGNPGPPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAGPM
GPRGPPGPPGKPGDDGETGKPGKSGERPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGAKGESGSPGENVPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGP
AGARFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSA
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAP
GPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPK
GATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGSPGEDGRPGPPGPQGARGQPGVM
GFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS
GFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP
GTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKD
GARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGAD
GQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAA
GRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGED
GPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPV
GPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPT
GKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLP
GPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPP
GNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAAGGLRQHDVEVDATLKSL
NNQIESIRSPEGSKKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMETGET
CVYPTPSSIPRKNWWSSKTKDKKHIWFAETINGGFHFSYGDESLSPTTASIQLTFLRLLS
TEGSQNVTYHCKNSIAYMDEETGNLKKALLIQGSNDVEIRAEGNSRFTYSVLEDGCTKHT
GKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgacgatgatgatggtgatgaaggtgacgatggtgacggtgacagcggcggtg
gcagcggagccccggggcgggcagacggaggccggcggcggctgcgtgcaggacgggcag
agctacagcgacaaggacgtgtggaagccggagccctgccggatctgcgtctgcgacacc
gggaccgtgctgtgcgacgagatcatctgcgaggagctgcgggactgccccagccccgag
atccccttcggagagtgctgccccatctgccccgccgagccccccgccgccaccgcccga
caacctggccccaagggacagaaaggtgaacccggcgatatcaaagatgttgtaggaccc
cgagggcctccgggaccgcagggcccggcaggcgagcagggacagcgaggggaccgcggc
gagaaaggggagaagggtgctcccggcccccgcggcagggatggagaacctgcccccggc
aaccccggcccccccggcccccctggacctcccggcccccccggcctcggtgggaacttc
gcggctcagatggcgggcggcttcgacgagaaggctggcggcgcgcagatgggcgtcatg
cagggacccatgggacccatgggaccccgcggcccccccggccccaccggcgctcccggt
ccccaaggatttcaaggcaaccccggcgagcctggcgaacccggcgctgctggtccgatg
ggtccccggggacctccgggacctcctgggaaacccggtgacgacggcgagacaggcaaa
cccggcaaatccggcgaacggccccccggcccccagggtgctcgcggcttccccgggacc
cccggtctgcccggagtgaaaggacaccggggttaccccggcttggacggtgccaaaggc
gaggcaggagcccccggagccaagggcgaatccggctcccccggcgagaacgtccccggc
cccatgggtccccgcgggctgccaggagagcgaggacgtcccggcccctccggcgctgcg
ggcgctcgcggcaacgacggtctccccggccccgccggcccccccggacccgttggccca
gccggagcccgcttccccggcgcccccggctcgaagggtgaagcaggtcccaccggcgca
cgaggtcccgagggtgcccaaggtccccgcggcgaatccggcacccccggctcccccggc
cccgctggcgcccccggcaaccccggcaccgacggcatccccggcgccaagggctcggcg
ggtgccccgggcatcgcgggtgctccaggcttccccggcccccgcggcccccccggaccc
caaggtgccaccggcccgctgggacccaagggacagacgggagaacccggcatcgcgggc
ttcaaaggcgagcaaggacccaagggcgagacgggccccgcaggaccccaaggtgccccc
gggccggctggggaggaaggcaagagaggagcccgtggggaacccggtgctgccggcccc
gtgggcccccccggagaaaggggtgctcccggcaatcgcggcttccccgggcaagacggg
ctggctggacccaagggtgctccgggtgaacgcggccccgctggcctcgccggtcccaag
ggtgccaccggtgaccccgggcgtcccggagagcctgggctgcctggagcaaggggtctc
accggccgccccggcgatgctggacctcaaggcaaagtcggccccaccggctctcccggc
gaggacggccgccccggcccccccggccctcagggtgcccgcgggcagcccggcgtgatg
ggtttccccggtcccaaaggcgctaacggtgagcctggaaaagccggcgaaaaagggctg
cccggtgccccgggcctgcggggtcttcctggcaaggatggtgagacaggagctgccggc
ccccccggacctgccggtcccgctggcgagagaggggagcaaggagcccccggtccctcc
ggcttccaggggctgcccgggccaccaggtccccccggagagagcggcaaacccggagac
cagggtgttcccggagaagccggtgcccccggtctcgttggtcccagaggcgaacgcggc
ttccccggtgagcgcggctcccccggcgcacaagggctgcagggtccccgcgggctcccc
ggcacgccaggcaccgacggacccaagggtgcaaccggcccggccggccccaacggcgcc
cagggacccccagggctgcagggaatgcccggcgagagaggagcagctggcatcgccggc
cccaagggtgaccggggagacgtcggcgagaagggtcccgagggagctccaggaaaggac
ggcgcacgcggtctgaccggtcccatcggcccccccggccccgctggccccaatggcgag
aagggtgaatccggcccccccggtccttctggcgctgccggtgcccgcggtgcccccggc
gagcgtggcgagcccggtgcccccggtcctgctggatttgccggccccccgggcgccgac
ggacaacccggtgccaaaggcgagcaaggagagcccgggcagaagggtgacgccggcgct
cccggtccccaaggtccctcgggtgcacccggcccccagggtcccactggtgtaactggt
cccaaaggagcccgcggtgctcagggtccccccggagccaccggattccccggagccgcc
ggccgcgtgggaccacccggccctaatggtaacccaggcccccccggcccccctggctct
gctggcaaggacggtcccaagggtgctcgtggcgacgccggtcccccgggccgtgctggt
gaccctgggctccaaggccctgctggcccccctggcgagaaaggcgaacctggagaggac
ggccctgcgggtcccgacggtccccctggtccccaaggcttggcaggacagcgtggcatc
gtcggtctgcccggacagcgcggcgagagaggcttccccgggctgccagggccatcgggc
gaacccggaaagcaaggagcacccggctccgcgggcgaccgaggcccccccggccccgtg
ggtccccccggtctcacaggacctgctggcgagcctgggcgtgagggcaaccccggtgct
gacggccccccaggcagagacggcgcagccggcgtgaagggcgatcgtggcgagaccggc
cccgtgggtgcccccggcgctcccggtgcccccggcgctcccggccctgtcggtcccacc
ggcaaacaaggagacagaggcgagacgggtgcacaagggcccatgggtccctccggtcct
gcaggcgctcgaggcatgccgggtccccaagggcctcgcggtgacaaaggtgagactgga
gaggctggagagagagggctgaagggccaccgcggcttcaccggactgcagggtcttccc
ggcccccccggtccttctggagaccaaggcgctgctggtcctgctggtccctccggcccc
agaggtccccccggccccgtcggcccctccggcaaagacggctccaacggcatgcccggc
cccatcggcccccccggcccccgcggacggagcggcgaacccggccctgcgggtcctcct
ggaaatcccggcccccccggtccccccggccctcccggcaccggtatcgacatgtcagct
ttcgccggcctgggtcagacggagaagggccccgaccccatccgctacatgcgggcggac
gaggctgccggcgggctgcggcagcacgacgtcgaggtggacgccaccctcaagtccctc
aacaaccaaatcgagagcatccgcagccccgagggctccaagaagaacccggccaggacc
tgccgcgacatcaagctctgccaccccgactggaagagcggagactactggatcgacccg
aaccagggctgcaccctggatgccatcaaggttttctgcaacatggagacgggcgagacc
tgcgtctacccgacccccagcagcatccccaggaagaactggtggagcagcaagaccaaa
gacaagaagcacatctggttcgccgagaccatcaacggtggcttccacttcagctacggc
gatgagagcctttctcccaccaccgccagcatccagctgaccttcctccgcctgctgtcc
accgagggctcccagaacgtcacctaccactgcaagaacagcatcgcctacatggacgag
gagacgggcaacctgaagaaagccctcctcatccagggctccaacgacgtggagatcagg
gccgagggcaacagcaggttcacctacagcgtcctggaggacggctgcacgaaacacact
ggcaaatggggcaagacagtcatcgagtaccggtcgcagaagacctcgcgcctgcccatt
gtagatattgcacctatggacattggtggcgccgagcaggagtttggcgtggatatcggc
cccgtctgcttcttgtaa
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