Bucephala clangula (common goldeneye): 308455538
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Entry
308455538 CDS
T11949
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform 1
KO
K12600
superkiller protein 3
Organism
bcla Bucephala clangula (common goldeneye)
Pathway
bcla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308455538 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcla03019
]
308455538 (SKIC3)
Messenger RNA biogenesis [BR:
bcla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
308455538 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_19
TPR_2
TPR_14
TPR_16
TPR_8
TPR_12
TPR_17
TPR_11
CFAP70_TPR_C
TPR_CcmH_CycH
ANAPC3
TPR_9
CFAP70_mid_TPR
CABIN1_N
TPR_15
ARM_TT21_C
Fis1_TPR_C
TTC22_N
BTAD
ARM_TT21
DUF8323
TPR-S
TP0900_4th
TPR_5
Motif
Other DBs
NCBI-GeneID:
308455538
NCBI-ProteinID:
XP_080824726
LinkDB
All DBs
Position
Z:1233997..1280817
Genome browser
AA seq
1579 aa
AA seq
DB search
MSDKEVKAALKSAREAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAASELEQPDQAK
GAYKKAIEIEPNQLLAWQGLANLYEKSNQTDAKGDLANVYKKLLELYESGDKQKWCNVCN
KLVELYHQEKKYLEVAETWQKLIRIKQEEGAEKAELHQLWKRMIQLLADSEQSQDNQTMQ
MLLNAFEEAVNSANNVPNEDHQNLYKDFIQCLSKLPHETAKLEKACHDMMVLYPTASYPL
EVLCLHFIESGAMSEEAMHCFSKLSEMDSSSGPGIIGFGIKCLHEKKYEEAVKSLTEGLK
NANQCLGAWHYLAEAQMKIHKHKNAVLSCDQALKSLGNPESPSLQQKKNRILQLKAEALI
KIGNADAAEEAINALEQIAGASSDPVVLAFRGRAYLNKGLVDQASKISQELLLSHPDLAE
AHALEGFIHYSQKKYEQAERSFQNAIERRADTAEYHQYLGLTYWFMSDETKKDKGKTLTQ
FLKAAKLDSYLGSVFCYLGNYYRDIAGDKSRARGCYKKAFELDGTDEESGTAAVDLSVEL
GDMDTALSILNEVTEKANAASIKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDSNCW
ESLGEAYFGRGSYATALKAFRKASELNPELVYSIYRAAAVEQILGKYENAIATYQEILKK
TEEYVPALKGLGECYLMLAKSALDKYLDRRAVEYIEQALEFFTRATKHRPDISSLWKLLG
DTCTTVHVISPARVNIQVLGLLLGKNEGKQMLKKIELLRLGGRCYGRALKLMPLPNIWCD
LGINYYRQAEHLTAVDAGMDEISELLEKSLQCLKKAVRLDSKNHLYWNALGVVASCSAIG
NYALAQHSFIKSVQAEQINVVAWTNLGVLYLATGNIEQAHEAFKIAQSLEPTYLLCWVGQ
ALVAEKVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKSNRNTEVYQYNIVQMNA
IPAAQVVMTKYTERNPDDASAFTMLGYLNEYMDLKRQAKDAYERAASLLKNSEDTEKYNI
AMQNYGRSLCAIGECDKAIEVYSSIPLTDFDGIVGIALAYFKKGLLQESIKAYEKALSVA
ESEQDKAHILTALAIIEYKQNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKQDVTLAT
AALKELLKHEKGKDGIYERCLIASAVYALQGRNMAVQREVSKAIHSNPDNPALWSLLSRL
VPLYALQKTEGGAMAGNIAHALDSRYGREALLNVAVNQLAAGCHMLKDQNENPLKNIQKA
IHFCPDNPVAWAVLMAACHAENTVVCLNNTQPKRTGLEMTLVSTISAKTGESNLPRNYIQ
TLEDWSLCQAITSLEETGRISEAEALCNKGLKSCPEHPALFLLLRQVQCKQLLQSHKELP
DTILEELHKTVMTSSSVAAWQWLAKVYQSQGMMVGAEMCYRKSLKLASQQGSWSGKLSSL
LRLAMLALEICMYTVSHFLSLLNVCIGHKANVPDEHWPSLVQEATTEALKLSSCPVASLL
QALLQYNRKMGARETRRMLERVVYQPGNPESIVSVARWYLLQHLYAKDDYELIDALVENA
KANGDVRALELNTKLSSSA
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaggaggtgaaagcagcattaaagagtgctagagaagccataagaaataaa
gaatataaggaagccttaaaacattgcaaggcagtcttaaagcaagaaaaaaataattac
aatgcctgggtatttattggcctggcagcttctgagctagaacagcctgatcaggccaaa
ggagcatataagaaggctattgaaattgaaccaaaccagctgctggcatggcagggatta
gcaaatttatatgagaaatccaaccaaaccgatgccaaaggagacttagcaaatgtttat
aaaaagctcttggaactctatgaaagtggagacaagcagaaatggtgtaatgtatgtaac
aagcttgtggaactatatcatcaagaaaagaaatatttagaggtggctgaaacatggcag
aaactaataaggataaaacaggaggaaggtgcagaaaaagcagagcttcatcagctttgg
aaaaggatgatccagttactggcagacagtgaacagagccaggacaatcagactatgcaa
atgcttttgaatgcatttgaggaggcagtgaactccgccaacaatgttcccaatgaagac
caccaaaatctttacaaagactttattcagtgcctgtcaaagcttcctcatgaaacagct
aaattggaaaaggcctgtcatgacatgatggttttatatcctactgcgagctatcctttg
gaagtactttgcttgcacttcattgagtcaggtgccatgtcagaagaggccatgcactgt
ttttctaagctttcggagatggactcaagtagtggtccaggcatcattggttttggtata
aaatgcctccatgaaaagaaatatgaggaggctgttaagagtcttactgaaggtttgaag
aatgctaaccagtgtctgggagcatggcattatttggcagaggcacagatgaaaattcac
aagcacaagaatgctgtcctgtcctgtgatcaagctctcaagagtcttggaaatcctgag
agtcctagtcttcagcagaagaagaaccgtattcttcagttgaaagcagaggctttgatt
aaaataggcaatgccgatgctgcggaagaagccattaatgcacttgagcagattgcaggt
gcaagcagcgatccagtggttttagctttcagaggtcgggcttatctaaacaaaggttta
gtggatcaagcttcaaagatttcacaagaacttctgttgtcacaccctgatctggctgag
gcccatgctcttgagggtttcatccattattctcaaaagaagtatgaacaggcagaaaga
agttttcaaaacgccattgaaagaagggctgacactgcagagtatcatcagtacctgggg
ctcacctattggttcatgagtgatgagacaaaaaaagacaaaggaaaaacactcactcag
ttcttgaaggctgcaaaattggacagctacttgggaagtgtcttttgttatttaggtaac
tactacagagacattgctggagacaaaagtagagctcgtggttgctataaaaaggctttt
gaactggatggaactgatgaagaatctggaacagcagctgtagacttaagtgtggaactt
ggagacatggataccgctctgtcaatcttgaatgaagtaactgaaaaagcaaatgctgct
tcaataaaatgggcctggcttcatcgtggactttactacctcagaactggtcagccgtca
caagcagtggctgatttgcaggcagctctcagggctgatccaaaggattccaactgctgg
gagtctctaggggaggcttactttggcagaggtagctatgcaacagctctaaaagccttc
aggaaggccagtgaactgaacccagagcttgtatacagcatttacagagctgctgcagtt
gagcagattctaggcaaatatgaaaatgctatagctacctatcaagaaatcttgaagaag
acagaagagtatgtgcctgcattgaaaggacttggtgagtgctatctcatgctggcaaaa
tcagcccttgataaatatcttgataggagggctgtggaatacatagagcaggctcttgaa
ttttttacaagggcaacaaagcaccgtcctgatatatcttccctttggaaactgcttgga
gatacctgtactactgtgcatgttatttcaccagccagagtgaatattcaagttctagga
ttgcttctgggtaaaaacgaaggcaaacagatgctgaagaaaattgagctgctcagactg
ggaggaaggtgttacggcagagctttaaaattaatgcctttgcctaacatatggtgtgat
cttggaataaattattatcgacaagcagagcacctcacagcagtggatgctggcatggat
gagatcagtgaactgctagagaaatctttacagtgtctcaaaaaagctgtgaggcttgac
agcaaaaatcatctttattggaatgcacttggtgtagttgcttcctgtagtgctattggg
aattatgctcttgctcaacattcgttcatcaaatctgttcaagctgagcaaatcaatgtt
gttgcctggactaacttgggggttttgtatctagcaactggaaacattgagcaagctcat
gaagccttcaagatagcccagtctctggagcccacttacctactgtgctgggttgggcag
gctcttgttgcggaaaaagttggcagctatgatactatggatctcttcaggcatacaact
gaacttagtatgcatactgagggagcaaaaggctatgcccactgggtttgttcaacactg
caggataaaagcaacagaaatactgaggtgtatcagtacaacatcgttcaaatgaatgct
attccagcagctcaggtggtaatgaccaaatatacagaaagaaatccagatgatgcatct
gctttcacgatgcttggttacttgaatgagtatatggatctaaaaaggcaggcaaaagat
gcttatgagagggccgcttcattactgaaaaactctgaggatactgagaaatataatata
gctatgcaaaactatggcagatcactgtgtgccattggtgaatgtgataaagccattgag
gtttattcatcaatacctctaactgattttgatggcattgtggggatagcattagcctac
ttcaagaaaggactcttacaagaaagtatcaaagcctatgagaaagccctgtctgttgca
gagtctgaacaagataaagcacacatcctgactgccttggcaataatagagtataagcag
aacaaagtggatgctgcaaagacactactgtttaaatgctcattaaaggaacctagtaca
gaaagtctaaaggctttgtgcacgctaggactggtaaagcaggatgttacgcttgcgaca
gcagccttaaaagaattactgaagcacgagaaaggaaaagatgggatttatgaaaggtgc
cttattgcatctgctgtttatgcattacaaggtagaaacatggcagtgcagagagaagtc
tcaaaagcaatacatagtaaccctgataatcccgctctttggtctcttttgtctcgacta
gttccactgtatgcattacagaagacagaaggtggagccatggcaggaaacattgcacat
gcacttgattcaagatacggaagggaagccctactaaatgttgcagtgaatcagctggca
gcaggatgtcacatgttaaaagatcagaacgaaaatcctctgaagaatattcagaaggca
atccacttctgtccagataaccctgttgcatgggcagtgctaatggcagcctgtcacgct
gagaacactgttgtctgtctaaacaacactcagccaaagcgaacaggtctagagatgaca
ctggtatctacaatttcagccaaaaccggagaaagtaaccttccacgtaattatatccag
actcttgaagattggtctctatgtcaagctatcaccagtttagaggagactggtagaatc
tcagaagctgaagcactttgtaacaagggtttaaagagctgtcctgagcacccagctctg
tttttgcttttgagacaagttcagtgtaagcagctgttgcagtctcacaaagagcttcca
gataccatcctggaggagcttcacaaaacagtcatgaccagttcttcagttgcagcctgg
caatggctggcaaaagtatatcagtcccaaggaatgatggttggagcagagatgtgttac
agaaagagtctgaagttggcgtcacagcagggcagctggagtgggaagttatccagtctg
ctcaggctggctatgctagcactggaaatctgcatgtatactgtttcccatttcttaagt
ctcctaaatgtctgcataggtcacaaggctaatgtcccagatgagcactggccatccttg
gttcaggaggcaacaactgaagctttgaaactctcatcctgccccgtggcatctctcctg
caagcactactacagtataatcgcaaaatgggagcaagggagactcgtcggatgttggaa
agagtggtctaccaaccagggaatccagaatccatagtgtcagtggcacgctggtacctc
ctgcagcatctgtatgccaaagatgattacgaattaatagatgcacttgtagaaaatgcc
aaagctaatggagatgttagagctctggaactaaacacgaaattgtcgtcaagtgcctag
DBGET
integrated database retrieval system
