Burkholderia orbicola: Bcenmc03_2699
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Entry
Bcenmc03_2699 CDS
T00669
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcm
Burkholderia orbicola
Pathway
bcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcenmc03_2699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcm03019
]
Bcenmc03_2699
Enzymes [BR:
bcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bcenmc03_2699
Messenger RNA biogenesis [BR:
bcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bcenmc03_2699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
Sacchrp_dh_NADP
Cas3-like_C_2
DegT_DnrJ_EryC1
CMS1
CARD_2
Motif
Other DBs
NCBI-ProteinID:
ACA91859
UniProt:
B1JY35
LinkDB
All DBs
Position
1:3008103..3009563
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AA seq
486 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQQPRGGGGGGGNRQPRAGGSGQPAAK
RDGNAQSKAGQPKAAAQQKAAKPRTQGGAAGNGGRPAGGGNGARPASGNAAHPNRNRSSR
SGQRGH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgctggtcaaggcggtcaacgagctcggc
tacacgtcgccgactccgatccagcagcaggcgatcccggccgtcctcggcggcggcgac
ctgctcgccggcgcacaaaccggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcacacgttctacgccgagcaccgtggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgtgcgtacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgcctgctcgaccac
atgcagcagaagaccatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cagcgccagaacctgctgttctcggcgaccttctcggatgaaatcaaggcgctcgccgac
agcctgctcgactcgcccgcgctgatcgaggtcgcccgccgcaacacgaccgccgagagc
gtcgcgcagaagatccacccggtcgaccgcgaccgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctggcggagcaactgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctggccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgaccagctgccgcacgtcgtcaac
ttcgatctgccgaacgtgcccgaggattacgtgcaccgcatcggccgcacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctgatcaagcgcgagatcccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgcgaagccggagccgatccagcaacgccgcgggcagcagcaaccgcgcggcggt
ggcggtggtggcggcaatcgccagccgcgtgccggcggctcaggccagccggccgcgaaa
cgcgacggcaacgcgcaatcgaaggccgggcaaccgaaggctgctgcgcagcagaaggcc
gcgaagccgcgcacgcaaggcggcgccgccggcaacggcggacgtccggcaggtggcggc
aacggtgcccgcccggcaagcggcaacgccgcgcatccgaaccgcaaccgttcgtcgcgc
agcggccagcgcggtcactga
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