KEGG   Burkholderia orbicola: Bcenmc03_3338
Entry
Bcenmc03_3338     CDS       T00669                                 
Name
(GenBank) DEAD/H associated domain protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bcm  Burkholderia orbicola
Brite
KEGG Orthology (KO) [BR:bcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcm03400]
    Bcenmc03_3338
Enzymes [BR:bcm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Bcenmc03_3338
    5.6.2.6  RNA 3'-5' helicase
     Bcenmc03_3338
DNA repair and recombination proteins [BR:bcm03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Bcenmc03_3338
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH4_Lhr DEAD Helicase_C WH3_Lhr DprA_WH ResIII HTH_IclR MarR HTH_Crp_2 MarR_2 LexA_DNA_bind TrmB
Other DBs
NCBI-ProteinID: ACA92493
UniProt: B1K9C8
LinkDB
Position
2:183638..188194
AA seq 1518 aa
MHPRARTPLAPYFNAPMDVTATRPAARALDVFHPVVAAWFTRTFAAPTGAQALAWPHIKA
GRSTLVAAPTGSGKTLTAFLCALDDLVRDALAHDGTLPDATLVVYVSPLKALSNDIHVNL
DAPLAGIAESLAQLGLPVPAIRTAVRTGDTTQAERAALRKRAPHVLVTTPESLYVLLSSA
SGRQMLSNVRSVIVDEIHALASSKRGSHLALSLERLDALTGRALPRIGLSATQKPIDAVA
RFLVGGPADAPRDCAIVDTGHTRERDLALELPNVPLEPVMATDVWEQVYDRIAGLAAAHR
TTLVFVNTRRTAERMARHLADRLGKDAIAAHHGSLAKEHRFDAEQRLKRGELKLLVATAS
LELGIDIGDVDLVCQVGSPRGIAPFLQRVGRSGHHVGGVPKGRLFPLSRDELVECAALLD
CVQRGELDALRIPEAPLDVLAQQIVAEVACAEWQEDALYASFTRAAPYARLARERFDEVM
KMLAEGFTSRRGVRGAYLHRDVVGGTVRGRRNAMMTATTSGGTIPDMADYAVLLEPQGIQ
VGTVNEDFAIESLTGDVFQLGNQSYRIIRVETGRVRVEDAQGQSPGIPFWLGEGLGRSDE
LSAAVGRLRARLDGLFADGDRQARTNAAKHANVTEAGKTPSRGKSRQAAAETDAPPASPD
NAPGGTALAPTESRLAPALRWLVDDLHLSPDAARQIADYLARTRAALGALPTQDTLVIER
FFDESGGTQLVIHSPYGSRINRAWGLALRKRFCRNFNFELQAAATDDAIILSLSLAHSFA
LDEVWRYLRSASAEHVLIQALLDAPMFGVRWRWNATTALALPRFTGGRRTAPQLQRMKSD
DLLATVFPDQVACLENIVGEREIPHHPLVDQTLDDCLHDAMDTDGWLALLRRIESGAIEL
IARDLPAPSPLAAEILNAKPYAFLDDAPLEERRTQAVQSRRWSDPETADDLGALDADAID
AVRDEAWPLVRDADEMHDALLTLACVADDEAHAHAGWPERLAELAERRRATKLATPGGAA
LWVPVERLVCLRALHPDARATPALKVPAACAQPWEADAALVDVIRARLTGFGPLTLDAIA
APLGLPPASIATALAALEREGYVMRGRFTPGATTDEWCERHLLARIHRYTVKRLRREIEP
VERADFMRFLFHWQHLTPDTRGTGRDALAAVVEQLEGYEAAASAWEDALLPARLTDYTAG
GLDELCRSGKLVWTRIGAPARAAGTPVKTTPIVLLPRRHLSAWQALRDPDAQPALSARAT
QVRDALAAHGAMFFDALLDELHMLPIELEQALGELVSAGLVNADSYAGLRALLKPAVKRS
ATYAPRTRRGGALIGGMDDAGRWALVQRQAPPDDDAPTPKRGPTTTDPDALEHIVWTLLR
RYGVVFWRLLEREADWLPSWRELVRVLQRLEARGEIRGGRFVAGFAGEQFALPEAIPILR
ELRRQPGDGQYVCVTGADPLNLAGTLLPGDKVPALAGNRVLFRDGVPVASLVSGTFHYAP
DLPPAAREEARLRLARSC
NT seq 4557 nt   +upstreamnt  +downstreamnt
atgcatccgcgcgctcgcaccccgctcgcaccctatttcaacgctccgatggacgtcacc
gctacccgccctgccgcccgtgcgctcgacgtgttccacccggtcgtcgccgcgtggttc
acacgcacgttcgccgcgccgaccggcgcgcaggcgctcgcgtggccgcacatcaaggcc
ggccgctcgacgctcgtggccgcgccgaccggctccggcaagacgctcaccgcgttcctg
tgcgcactcgacgatctggtgcgcgatgcgctcgcgcacgacggcacgctgcccgatgcg
acgctggtcgtctacgtgtcgccgctgaaggcgctgtcgaacgacatccacgtgaacctc
gacgcgccgctcgccggcatcgcggaatcgctcgcgcagctcggcctgccggtgccggcg
atccgcaccgcggtgcgcaccggcgatacgacgcaggccgagcgcgccgcgctgcgcaag
cgcgcgccgcacgtcctcgtcacgacccccgaatcgctgtacgtgctgctgtcgtccgcg
tcggggcggcagatgctgtcgaacgtgcgctcggtcatcgtcgacgaaatccatgcgctg
gcgtcgtccaagcgcggcagtcatctcgcgctgtcgcttgaacgcctcgacgcgctgacc
gggcgcgcgctgccgcgcatcgggctgtcggccacgcaaaagccgatcgacgcggtcgcg
cgcttcctcgtcggcgggccggccgacgcgccgcgcgactgcgcgatcgtcgacacgggc
cacacgcgcgagcgcgacctcgcgctcgaactgccgaacgtgccgctcgaaccggtcatg
gccaccgacgtgtgggaacaggtgtacgaccgcatcgccgggctcgcggccgcgcatcgc
acgacgctggtgttcgtcaacacgcggcgtaccgccgagcgcatggcgcgccatctcgcc
gaccggctcggcaaggacgcgatcgccgcgcatcacggcagtctcgcgaaggagcaccgc
ttcgacgccgagcagcgcctgaagcgcggcgaactgaagctgctcgtcgccaccgcgtcg
ctcgaactcggcatcgacatcggcgacgtcgatctcgtctgccaggtcggctcgccgcgc
ggcatcgcgccgttcctgcagcgtgtcggccgctcggggcaccacgtcggcggcgtgccg
aaggggcggctctttccgctgtcgcgcgacgagctggtcgaatgcgcggcgctgctcgac
tgcgtgcagcgcggcgaactcgatgcgctgcggattcccgaagcgccgctcgacgtgctc
gcgcagcagatcgtcgccgaagtcgcgtgcgcggaatggcaggaagacgcgctgtatgcg
agcttcacgcgcgccgcgccgtacgcgcggctcgcgcgcgagcgcttcgacgaagtgatg
aagatgctcgccgagggattcacgagccgtcgcggcgtgcgcggcgcgtacctgcaccgc
gacgtggtcggcggcaccgtgcgcggccgccgcaacgcgatgatgaccgcgaccacttcc
ggcggcacgatccccgatatggccgactacgcggtgctgctcgaaccgcagggcatccag
gtcggcaccgtcaacgaggatttcgcgatcgagagcctgaccggcgacgtgttccagctc
ggcaaccagtcgtaccggatcattcgcgtggaaacgggccgcgtgcgcgtcgaggatgcg
cagggccaatcgccgggcattccgttctggctcggcgaggggctggggcgcagcgatgaa
ctgtcggcggcggtcggccggctgcgtgcgcggctcgacgggctgttcgcggacggcgat
cgacaggcgcggaccaacgcggcgaagcacgcgaacgtcaccgaggccggcaagacgccc
tcccgcggcaaatcccgacaagcggccgccgagactgacgcgccgcccgcctcgcccgac
aacgcgcccggcggcaccgcgctcgcccccaccgaaagccgcctcgcgcccgcgttgcgc
tggctcgtcgacgatctccacctgtcgcccgacgccgcgcgccagatcgccgactacctc
gcccgcacccgcgccgcgctcggcgcattgccgacgcaggacacgctcgtgatagagcgg
ttcttcgacgaatcgggcggcacgcagctcgtgatccattcgccgtacggcagccgcatc
aaccgcgcatgggggctcgcgctgcgcaagcgcttctgtcgcaacttcaacttcgaattg
caggccgctgcaaccgacgacgcgatcatcctgtcgctgtcgctcgcgcacagcttcgcg
ctcgacgaggtgtggcgctacctgcgttcggccagcgccgagcacgtgctgatccaggcg
ctgctcgatgcgccgatgttcggcgtgcgctggcgctggaacgcgaccaccgcgctcgcg
ctgccgcgtttcaccggcggccggcgcaccgcaccgcaactgcagcggatgaagagcgac
gatctgctcgcgacggtgtttcccgaccaggtcgcgtgcctcgagaacatcgtcggcgaa
cgcgagattccgcatcacccgctcgtcgaccagacgctcgacgactgcctgcacgacgcg
atggacaccgacggctggctcgcgctgctgcgccggatcgaaagcggcgcgatcgagctc
atcgcgcgcgacttgcccgcgccgtcgccgcttgcggccgagatcctgaatgcgaagccc
tacgcgttcctcgacgatgcgccgctcgaggagcgccgcacacaagccgtgcagtcgcgc
cgctggagcgaccccgaaacggccgatgacctcggggcgctcgacgccgacgcgatcgat
gcggtacgcgacgaagcgtggccgctcgtgcgcgacgccgacgagatgcacgatgcgctg
ctcactctcgcctgcgtcgccgacgacgaggcgcacgcgcacgcaggctggcccgagcga
ctcgcggaactcgcggaacgccgccgcgcgacgaaactcgcgacgccgggcggcgccgca
ctgtgggtgccggtcgagcggctcgtctgcctgcgggcgctgcatccggacgcgcgcgcg
acacccgcgctcaaggtgccggccgcatgcgcgcagccatgggaagccgatgcggcgctc
gtcgacgtgatccgtgcgcggctcaccggcttcggtccgcttacgctcgatgcgatcgcc
gcgccgctcggcctgccgcccgcgtcgatcgcgacggcgctcgccgcgctggaacgcgaa
ggctacgtgatgcgcggccgcttcacgccgggcgcgacgaccgacgaatggtgcgaacgg
cacctgctcgcgcgcattcatcgctatacggtgaagcggctgcgccgcgagatcgagccg
gtcgaacgcgccgatttcatgcgcttcctgttccactggcagcacctgacacccgacacg
cgcggcaccggccgcgatgcgctggcagccgtggtcgaacagctcgaaggctacgaggcc
gcggcgagcgcgtgggaagacgcgctgctgcccgcgcggctcaccgactacacggcgggc
ggcctcgacgagctgtgccgctcgggcaagctggtgtggacccgcatcggcgcgccggcg
cgcgcggccggcacacccgtgaagacgacgccgatcgtgctgctgccgcgccgccatctt
tccgcatggcaggcgctgcgtgaccctgatgcgcaaccggcactgtccgcgcgcgccacg
caagtgcgtgacgcgctcgccgcgcacggcgcgatgttcttcgatgcgctgctcgacgag
ctacacatgctgcccatcgagctcgaacaggcgctcggcgaactcgtgtcggccggcctc
gtgaatgcggacagctacgcgggcctgcgcgcgctgctgaagccggccgtcaagcgcagc
gcgacctatgcgccacgcacgcggcgcggcggcgcgctgatcggcgggatggacgacgca
gggcgctgggcgctcgtgcaacgtcaggccccgccggacgatgacgcgcccacgccgaaa
cgcggccctaccacgaccgatcccgacgcgctcgaacatatcgtgtggacgctgttgcgc
cgctacggcgtcgtgttctggcgattgctcgaacgcgaagccgactggctgccgagctgg
cgcgaactcgtgcgcgtgctgcaacgcctcgaagcacgcggcgagattcgcggcggacgc
ttcgtcgccgggttcgcgggcgagcaattcgcgctgcccgaggccatcccgatcctgcgc
gaactgcggcggcaaccgggcgacggacaatacgtatgcgtgacgggcgccgacccattg
aatctcgccggcacgctgctgcccggcgacaaggtgccggcgctggccggcaaccgcgtg
ctgtttcgcgatggcgtgcccgtcgcatcgctggtatcgggtacgttccactacgcgccc
gacctgccgcccgccgcgcgcgaggaggcacgtctgcggctcgcgcgttcctgctga

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