Heyndrickxia coagulans DSM 1 = ATCC 7050: BF29_2133
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Entry
BF29_2133 CDS
T03712
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bcoa
Heyndrickxia coagulans DSM 1 = ATCC 7050
Pathway
bcoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF29_2133 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoa03019
]
BF29_2133 (recQ)
03400 DNA repair and recombination proteins [BR:
bcoa03400
]
BF29_2133 (recQ)
Enzymes [BR:
bcoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BF29_2133 (recQ)
Messenger RNA biogenesis [BR:
bcoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF29_2133 (recQ)
DNA repair and recombination proteins [BR:
bcoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BF29_2133 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Sigma70_r4_2
GerE
HTH_23
HTH_28
HTH_38
HTH_29
Motif
Other DBs
NCBI-ProteinID:
AJH79891
LinkDB
All DBs
Position
complement(2067921..2070098)
Genome browser
AA seq
725 aa
AA seq
DB search
MEKAKQVLKQYYGYDHFRRGQEAIISRIMDGKDTLGMMPTGGGKSVCYQVPAMLLSGVTL
VISPLISLMKDQVDTLSGMGIPATYVNSSLDPTEINERLAAASKGAYKLIYLAPERLEFP
PFLHLLENINVSLIAVDEAHCISQWGHDFRPSYRLIEKLISQFKPKPVTLALTATATPQV
KKDICQLLMIPEENTVATGFARENLHFQVVKGQDRDAFVLDYILKNKNQSGIIYTATRKE
AERIYHFLVKNGIRAGKYHAGMKEAERGSFQDRFLYDDVSVMVATSAFGMGIDKSNVRFV
IHYHMPKNMEAYYQEAGRAGRDGEESDCILLFAPQDIHTQTFLIEQSANEDRKLGEYAKL
RKMIDYCHTEGCFQQFILHYFGEKEAQPCGKCGNCLDTRAKTDVTKEAQMVFSCVKRMQE
RFGKTMIAKVLAGSNDQKIRQFGFDKLSTFGIMKDKTQKEVAELIDFLTADGFLRAKDGT
YPVLMLTKKAVEVLLSKKQVFRKESVRAQQIATDNLLFEKLRTLRKEIADREKIPPYIVF
SDQSLREMSARMPVTREAFLQVKGVGERKAEQYAELFMHVIRTYMEEEGIQAQAQPKALP
HTKKAREDGKEKSHHVTYRLLQEGKTIREIAEIRGMSERTIETHVIKCSDEGFPVEWSRF
IPERYRERIADAASRAGTGRLTPIKELLPDEVSYFMIRAFLQERKHHPDQGKTVSYISGG
DWHHD
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagccaaacaggttttaaagcaatattatggctatgatcatttccgccgcggg
caggaagccattatcagccggatcatggatggcaaggatacactgggcatgatgccgacc
ggcggggggaagtcggtttgctaccaggtgccggccatgcttttatcaggggtcacgctt
gtcatttcgccgctgatttccctgatgaaagaccaggtggatacactttcaggcatgggg
ataccggcaacatatgtgaacagctccctggatccgacagaaatcaatgagcggcttgcg
gctgcatcaaagggcgcatacaaattaatttatctcgcaccggaacggctcgaatttcct
ccttttttgcatcttctcgaaaacatcaatgtctcccttatcgctgtcgatgaagcgcat
tgcatctcacaatggggccacgacttccgcccaagctaccgtttaatcgaaaaactaatt
tcacaattcaagccaaaaccggtgacgcttgctttaaccgctacagcgacgccgcaggta
aagaaagacatttgccagctgctcatgattccggaagaaaacacagtggctacaggtttt
gcccgtgagaacctgcatttccaagtggtgaaaggccaggaccgcgatgcctttgtgctg
gactacatcctgaaaaataaaaaccagtccgggatcatttacacggcaacgagaaaagag
gccgaacgcatttatcattttcttgttaaaaatggcattcgtgcgggaaaatatcatgca
gggatgaaagaagcggagcgcggcagctttcaggacaggtttttatacgatgatgtttcc
gtgatggtcgccacctccgctttcgggatggggatcgacaaaagcaatgtgcggtttgtc
atccattatcatatgccgaaaaatatggaggcgtattaccaggaagcaggacgggccggg
cgcgatggggaagaaagcgactgtattttgttgtttgctccccaggatatccatacgcaa
acttttttaattgagcagtcagccaacgaagacagaaaactgggcgagtatgccaagttg
cgaaaaatgattgactactgccatacggaaggctgttttcagcagttcattttgcattat
ttcggcgaaaaagaggcacagccgtgcggcaaatgcggcaactgcttggatacccgcgca
aaaacagacgtgacaaaagaagcgcaaatggttttttcctgtgtcaaaaggatgcaggaa
cggttcggcaaaaccatgattgcaaaagtgctggccgggtcaaacgaccagaaaatcagg
caattcggttttgataagctgtccacttttggcattatgaaagacaaaacgcaaaaagaa
gtggctgaactgattgattttctgacagctgacggttttttgcgtgccaaagacggtacg
tacccggtgcttatgctgacaaaaaaggcagtggaagtcctgctttcaaaaaaacaggtt
ttccggaaagaaagtgtcagggcgcagcaaattgcaaccgataaccttttatttgaaaaa
ctgcgcacacttcgcaaagagattgctgaccgtgaaaaaataccgccttatattgtcttt
tccgaccagtcgctgagggaaatgagtgccaggatgccggtaaccagggaggctttcctg
caggtgaaaggggttggggaaagaaaggcggaacagtacgccgagctgtttatgcacgtg
atccggacatacatggaagaagaagggatacaagcgcaagcgcagccgaaagcattgccg
catacaaaaaaagcgcgtgaagacgggaaagaaaaaagccatcatgtgacataccgcctg
ttacaagaaggcaaaacgatccgtgaaattgcggaaatccgcggcatgtcggaaagaacg
attgaaacgcatgtgatcaaatgttcagacgagggatttccggtagaatggagccgcttt
attcccgaaaggtaccgggagcgaatcgccgatgccgcaagccgggcaggtaccgggcgg
cttacgccgataaaggaattgctgccggatgaggtcagttattttatgatccgggctttc
ttacaggaaaggaagcatcatccggaccaaggaaaaacagtatcatatatttctggaggg
gattggcatcatgattga
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