Heyndrickxia coagulans DSM 1 = ATCC 7050: BF29_2408
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Entry
BF29_2408 CDS
T03712
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bcoa
Heyndrickxia coagulans DSM 1 = ATCC 7050
Pathway
bcoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BF29_2408 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoa03021
]
BF29_2408 (rpoB)
03400 DNA repair and recombination proteins [BR:
bcoa03400
]
BF29_2408 (rpoB)
Enzymes [BR:
bcoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BF29_2408 (rpoB)
Transcription machinery [BR:
bcoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BF29_2408 (rpoB)
DNA repair and recombination proteins [BR:
bcoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BF29_2408 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AJH78743
UniProt:
A0A8B4BUE6
LinkDB
All DBs
Position
2327024..2330584
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AA seq
1186 aa
AA seq
DB search
MSHQLVQYGRHRQRRSYARIKEILELPNLIEIQTASYQWFLDEGLREMFQDISPIEDFAG
NLSLEFIDYSLGEPKYSIDECKERDVTYAAPLRVKVRLVNKETGEVKDQDVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYFNSKMDKNGKYGYTATVIPNRGAWLEYETDAKDVA
YVRIDRTRKLPITVLLRALGFGSDQEIIDLIGDNEYLRNTLEKDNTESTEKALLEIYERL
RPGEPPTVENAKSLLISRFFDPKRYDLANVGRYKMNKKLHLKFRLFGQRLAESIADPETG
EIIAEEGTVLDRRTLDKIVPFLEKGLKFETYSQAGGVVDDDITLQSIKIYAPIDDNEKVI
NVIGNAYVDESYKHITPADIVASISYFFNLLHGVGNTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDINTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNRFG
FIETPYRRVDPDTGRVTEHIDYLTADEEDNYVVAQANAQLDENGFFVDDEVYARFRGENI
VVKTDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMKPQAPIVGTG
MEYVNAKDSGAALICKYDGIVEHVEAREIWVRRVIDVDGQEVKGDLDKYRLQKFKRSNNG
MCINQRPIVKKGDRVVKGEILADGQSMDQGELALGQNVLVAFMTWEGYNYEDAIIMSEKL
VKEDVYTSIHIEEYESEARDTKLGPEEMTRDIPNVGEDALKNLDERGIIRIGAEVKDGDL
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFTREAGDEL
PPGVNQLVRVYIVQKRKIHQGDKMAGRHGNKGVISRILPEEDMPFLPDGTPVQIMLNPLG
VPSRMNIGQVLELHLGMAAKKLGLHVATPVFDGAREEDVWETIEEAGMARDAKTVLYDGR
TGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGLD
VKILSGDDEEIEMRDLEDDDDLNQADTLNIAPETKEEPEGIGASKD
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacatcaactagttcagtatggacggcaccgccagcgcagaagttacgcgcgcatc
aaagaaattttagagctgccaaaccttatcgaaatccaaaccgcatcttaccaatggttc
cttgacgaaggtttgcgtgaaatgttccaggacatctctccgatcgaggattttgccgga
aacctgtcgctggagtttattgactacagcctcggcgaaccgaaatattccatcgacgaa
tgcaaagagcgcgacgtaacgtacgctgctccgcttcgtgtaaaggtgcgccttgtcaat
aaggaaaccggtgaagtaaaagaccaggacgtattcatgggcgatttcccgttaatgacc
gaaacggggactttcatcattaatggcgcggaacgtgttattgtatcccagcttgtccgt
tcccctagtgtttattttaacagcaaaatggacaaaaacgggaaatacggctacaccgca
acggtaattccgaaccgcggcgcctggcttgaatatgaaacagatgcgaaagatgtggct
tatgtccgcatcgaccgcacaagaaaactgccgattaccgttctcctcagggcgctcggc
ttcggctccgaccaggaaattattgatctgatcggcgataatgagtacttaagaaatacg
cttgaaaaagataataccgaaagcacggaaaaagcgcttcttgaaatatatgaacgcctc
cgtccgggcgaacccccgaccgttgaaaatgcaaaaagcctgctgatttcgcgtttcttt
gacccgaaacgctatgatctggccaatgtcgggcgttacaaaatgaataaaaagcttcac
ctgaaattccgcctgttcgggcaacggctggctgaatcgatcgcagaccctgaaaccggc
gaaatcatcgcggaggaaggaaccgttttagaccggcgtacgcttgataaaattgtgcct
tttctcgaaaaaggcctgaagtttgaaacgtacagccaggctggcggcgttgttgatgat
gatatcacattgcagtccatcaaaatttatgccccgattgacgataacgaaaaagtcatc
aatgtaatcggaaatgcttatgtcgatgaaagctataaacatattacacctgcggatatt
gtggcttccatcagctacttctttaatttgctgcatggcgtcggcaatacagatgatatc
gaccacctcggcaaccgccgtttacggtctgtcggcgaattgctgcaaaaccagttccgc
atcggcctttcccggatggaacgcgttgtccgagaaagaatgtcgatccaggacattaat
actatcacgccgcagcagctgatcaatattcgtccggtcattgcggccattaaggagttt
ttcggcagttcacagctgtcccagtttatggaccagacaaacccgcttgcggaactgacc
cataaacgccggttgtcggcgctcggcccgggcggtttgacccgtgagcgcgccgggatg
gaagtgcgtgacgtgcactattcccactacggccgcatgtgcccgattgaaacgcctgaa
ggcccgaacatcgggttgatcaactctttatcaacttatgcaaaagtaaaccgttttggt
tttatcgaaacgccttaccgcagggttgatccggatacagggcgtgttacggagcatatt
gattatttaacggctgatgaagaagacaattacgtcgtcgcacaggcgaacgcacagctg
gatgaaaacggctttttcgttgacgatgaagtatatgcgcgtttccgcggtgaaaacatt
gttgtaaaaacagaccgcgttgattatatggacgtttcgccgaagcaggttgtatcggct
gcaacggcatgtattccgttccttgaaaacgacgactcgaaccgtgcgctgatgggtgca
aacatgcagcgccaggcggttccgcttatgaagccgcaagcgccgattgtcggaaccggg
atggaatatgtcaatgcgaaggattccggcgcggcactcatctgcaaatatgacggcatt
gttgaacatgtggaagcccgggaaatctgggtgcgccgtgtgatcgatgtcgacggacag
gaagtaaagggcgaccttgacaaataccgcctgcaaaaattcaaacgttccaacaatggc
atgtgcatcaaccagcgcccgattgtgaaaaaaggcgaccgtgtggtaaaaggcgaaatt
ttagcggacggccagtcaatggaccaaggtgaacttgcccttggccagaacgtgctcgtt
gcctttatgacatgggaaggttacaactatgaagatgccattattatgagtgaaaaactt
gtaaaagaagatgtgtatacttctatccatattgaagaatacgaatctgaagcacgcgat
acaaaactcgggccggaagaaatgacccgtgatatcccgaacgtaggggaagatgctttg
aaaaaccttgacgaacgcgggattatccggattggtgctgaagtaaaagacggcgatttg
cttgtcggaaaggtcaccccgaaaggcgttacggaattaacggcggaagaacgtctgctc
catgcgattttcggtgaaaaagcgcgcgaagtcagggatacatcactccgcgttccgcac
ggcggcggcggtatcgtgctcgatgtcaaagtgtttacacgtgaagccggggatgaactt
ccgcctggcgtgaaccagcttgtccgtgtctatattgtacagaaaaggaaaatccaccag
ggcgacaaaatggccgggcgccacgggaacaaaggggttatctcccggattcttccggaa
gaagatatgcctttcctcccggatgggacacctgtccagatcatgttgaatccgctcggc
gtgccttcacggatgaatatcgggcaggtgcttgaactccacctcggcatggcagccaaa
aaactcggcctccacgttgcgacgcctgtatttgacggcgcacgtgaagaagatgtatgg
gaaacgattgaagaagccggcatggcgcgcgatgcaaaaacggtcctttatgacggccgc
accggtgaacctttcgacaaccgtgtatcagtcgggattatgtatatgatcaagctcgcc
cacatggttgatgataaactgcatgcccgctcaacaggcccttactcgcttgtcacccag
cagccgcttggcggtaaagcacagtttggcggccaaaggtttggcgaaatggaagtatgg
gcgcttgaagcctacggcgcagcctatacgctccaggaaatcctgactgttaaatcggac
gatgttgtcggccgtgtgaaaacttatgaagcgatcgtcaaaggggaaaatgtccctgaa
ccgggtgtcccggaatcgttcaaagtgctgatcaaagaacttcaaagtttgggactggac
gtgaagattctttccggcgacgacgaggaaattgaaatgcgcgatctcgaagacgacgat
gacctgaatcaggccgatacgctgaatattgcgcccgagacaaaagaagaaccggaagga
atcggggcatccaaagactaa
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integrated database retrieval system
