Heyndrickxia coagulans DSM 1 = ATCC 7050: BF29_2409
Help
Entry
BF29_2409 CDS
T03712
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcoa
Heyndrickxia coagulans DSM 1 = ATCC 7050
Pathway
bcoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BF29_2409 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoa03021
]
BF29_2409 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcoa03400
]
BF29_2409 (rpoC)
Enzymes [BR:
bcoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BF29_2409 (rpoC)
Transcription machinery [BR:
bcoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BF29_2409 (rpoC)
DNA repair and recombination proteins [BR:
bcoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BF29_2409 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AJH79800
UniProt:
A0A8B4BXE8
LinkDB
All DBs
Position
2330717..2334310
Genome browser
AA seq
1197 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTEAGDTSLEKKQLLSEKEYRAYREKYGNKFQAGMGAEAIKKLLQ
DVDVNKECEMLKEELKVAQGQRRTRAIKRLEVLEAFRNSGNKPEWMVLDVLPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPRE
MAIELFKPFVMKELVEKGLAHNIKSAKRKIERLQPEIWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREDAVGEGSVFKDVNEVYTAYYNGYVHFHTRIAIY
AGSLNNPTFTEEQNKKLLITTVGKVIFNEILPESFPYINEPTKTNLEEKTPDKYFVDPSI
DVKAHIKEQPLIRPFVKGFLGSIIAEVFKRFKITETSKMLDRLKDLGFHYSTKAGITVGV
ADIVVLGEKEKILSDAQKKVDTVMKQFRRGLITEDERYDRVISIWSGAKDTIQGKLMESL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVQEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLISALKEGNEIIESLE
ERLTGRYSRKTIKHPETGKVIIEENGFITEDIAKEIVDAGYEKVWIRSAFTCNTRHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEVEGVVTSISEGRDRQYEIVVQGAVETRTYTAPYTSRLKVAVDDHVVR
GQELTEGSIDPKDLLRVTDVTTVQEYLLREVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
LDAGDTDVLPGTLLDIHQFGEANEKALKEGNRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMTRYRKTVPELVKKEEEVPAE
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
ttgctggatgtaaataattttgagtacatgaaaatcggtcttgcttcaccggataaaatc
cgatcctggtcatacggtgaagtaaaaaaaccggaaacaatcaactaccggacgttaaaa
cctgaaaaagacgggcttttttgcgaacggattttcgggccgacgaaagattgggaatgc
cattgtgggaaatataaacgcgttcgttacaaaggcgtggtttgtgaccgctgcggcgtg
gaagtaacaagatcaaaagtgcgccgggaaagaatggggcatattgaacttgccgcccct
gtttcgcatatttggtacttcaaagggattccaagccgcatgggccttgtgcttgacatg
tccccgcgcgccctggaagaagtcatttacttcgcatcttacgtcgtaacggaagcaggc
gacacttctttggaaaagaaacagcttctttccgaaaaagaataccgtgcctaccgtgaa
aaatacggcaacaaattccaggcaggcatgggcgcggaagccattaaaaagctgctgcaa
gatgtagatgtcaacaaggaatgcgaaatgctgaaagaagagctgaaagttgcccagggg
cagcgccgtacacgcgccatcaaacgccttgaagtactggaagctttccgtaattccggc
aataaaccggaatggatggtgctggatgttctcccggtcattccgcccgaactgcggcca
atggtacaactggaaggcggccgctttgcaacatccgacttaaatgatttgtaccgccgt
gtgatcaaccggaacaaccgcctgaaacgcctgcttgatcttggcgcaccaagcatcatt
gtccaaaatgaaaaacggatgctgcaggaagccgttgacgctctgattgacaacggccgc
cgcggacgtccggtaaccggcccggggaaccgcccgttaaaatcgctttcccatatgctg
aaggggaaacagggccgtttccgccaaaacctgctcgggaagcgggttgactattccggc
cgttccgttattgttgtcggcccgaacctgaaaatgtaccaatgcggcctgccgcgcgaa
atggcgattgaactgttcaagccgttcgtgatgaaagaactggttgaaaagggcctcgcc
cataatattaaaagcgcaaaacggaaaattgaacgtttgcagcctgaaatttgggatgtc
cttgaagaagtcattaaagaacaccctgtcctgttgaaccgtgcgcctactttgcacagg
ctcgggatccaggcgtttgaaccgacgcttgtggaaggccgtgcgatccgtcttcatccg
ctcgtatgtacggcatacaacgcggactttgacggcgaccaaatggcggtccacgttccg
ttatccgctgaggcacaggcggaagcgcgcatgctgatgcttgccgcacaaaatattttg
aatccgaaagacgggaaaccggtcgttaccccgtcccaggacatggtacttggcaactac
tacttaacgcttgaacgtgaagatgcagtcggtgaaggatctgtcttcaaagatgtaaat
gaagtgtacacggcttattataacggctacgtgcatttccatacgagaattgccatttat
gccgggtcgctgaacaacccgacgttcacggaagagcaaaacaagaagctgctgattacc
acagtcgggaaagtgatcttcaatgaaattttgccggagagcttcccatatattaatgaa
ccgacgaaaacaaatcttgaagaaaaaacgccggataaatactttgttgatccttcgatt
gacgtaaaagcgcatattaaagaacagccgttaatccgcccgtttgtaaaaggcttcctt
ggcagcatcattgccgaagtgttcaaacggttcaagattacggaaacatccaagatgctc
gaccgcttaaaagatcttggcttccattattcgacaaaagccgggattaccgttggtgtt
gcggatatcgtcgttttaggcgagaaggaaaaaattctttcggatgcccagaaaaaagtc
gatacggtcatgaaacagttccgccgcggtttaattaccgaagacgaacgctatgaccgc
gttatttcgatctggagcggggctaaagacacgatccagggcaaactgatggaatcgctc
gataaacggaacccgatttttatgatgagtgactcgggggcccggggtaacgcgtcgaac
tttacacagcttgccggcatgcgcggtttgatggccaacccggccggccggattattgaa
ttgccgattaagtccagcttccgtgaaggcttaaccgtgcaagagtactttatttcgacg
cacggtgcccgtaaaggccttgccgatactgcccttaagacggcagactcgggttatctg
acacgccggcttgttgatgtggcgcaggatgtcatcattcgtgaagacgactgcggcaca
gaccgcgggcttttgatcagtgcgttgaaagaaggcaatgaaatcattgaatcgcttgaa
gaacggttaaccggccgttattcaagaaaaacgatcaaacatcctgaaacaggcaaagtg
atcattgaggaaaacggctttatcacggaagatatcgcgaaggaaattgtcgatgccggc
tatgaaaaagtctggatccgttcggccttcacttgcaatacccgccatggcgtatgtaaa
aaatgctacggccgcaaccttgccaccggccaggaagtggaagtcggcgaagcagtcggg
attattgccgcccaatcaatcggcgaacctggcacacagctgacgatgcgtacattccat
acaggcggtgttgccggggatgacatcacacaaggtcttccgcgtattcaggaattgttt
gaagcccggaacccgaaaggccaggctgtcatttccgaagtggaaggcgttgttacttcc
atcagcgaagggcgcgaccgccaatatgaaattgtcgttcagggcgctgtcgaaacgcgc
acctatacggccccttatacttcccgcttgaaagtggcggtagatgaccacgtcgtgcgc
gggcaggagctgacggaaggttccattgacccgaaagacctgttgcgtgtcacggatgtc
acaaccgtacaggaatacttgcttcgtgaagtacagaaagtttaccggatgcaaggagtg
gaaattggcgacaaacacattgaagtgatggtccgccaaatgctgagaaaagtaagggtg
ctcgatgccggcgacacggatgtcctgccgggaacattgcttgatatccatcagttcggt
gaagcgaatgaaaaggcgctcaaggaaggcaaccgccctgcaacaggccgccctgttctg
ctcgggattacaaaagcttccttggaaaccgattcgttcttatcggcagcctccttccag
gaaacgacccgcgtattaaccgatgcggcgatcaaggggaaacgcgatgaactgctcggc
ttgaaagaaaacgtcattatcgggaaactggttcctgcagggacgggcatgacccgctac
cgcaaaacggttcctgaactggtgaaaaaggaagaagaagtgccggctgaataa
DBGET
integrated database retrieval system
