Blautia coccoides: BLCOC_38880
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Entry
BLCOC_38880 CDS
T09601
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bcoc
Blautia coccoides
Pathway
bcoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLCOC_38880 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoc03019
]
BLCOC_38880 (cshA)
03009 Ribosome biogenesis [BR:
bcoc03009
]
BLCOC_38880 (cshA)
Enzymes [BR:
bcoc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BLCOC_38880 (cshA)
Messenger RNA biogenesis [BR:
bcoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BLCOC_38880 (cshA)
Ribosome biogenesis [BR:
bcoc03009
]
Prokaryotic type
rRNA helicases
BLCOC_38880 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WPX75526
LinkDB
All DBs
Position
4279326..4280915
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AA seq
529 aa
AA seq
DB search
METTKFEELDLFPEIEKAVRYMGFEEASPIQAKAIPAMISGRDIIGQAQTGTGKTAAFGI
PLLQKIDIKNKKLQAIVLCPTRELAIQVADEIRNLAKYLHGIKVLPIYGGQDIVKQIRSL
KNGTQLIIGTPGRVMDHMRRKTLKMDDVHTVVLDEADEMLNMGFREDIETILSGVPEERQ
TVLFSATMPKPILEITKKFQKDAEVIKVTKKELTVPNIEQFYYDVKPKNKEEVLSRLLDL
YSPRLSVVFCNTKKQVDLLVNALIGRGYFAAGLHGDMKQAQRDRVMQSFRKGRTDILVAT
DVAARGIDVDDIEAVFNYDLPQDDEYYVHRIGRTGRAGRGGRAFTFASGRELYKLKEIQR
YCKTKIYAQKVPSLNDVANTKMENILENVDSVIERENLSLMIDAIDEKVNNSDYTTLDLA
AALLKLYMGMVQEEPEEEAVDFGDTGAEEPGMVRLFINIGKKQRVRPGDILGAIAGESGM
PGKLIGSIDMFDKYTFVEVPREYAKDVLNAMKTAKIKGNTIAIEPANQR
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaacgaaatttgaagaattggatttattcccggaaattgaaaaagcagtgaga
tacatgggttttgaggaggcctcccctattcaggccaaagcaattcctgctatgataagc
ggccgtgatattatcggccaggcacagaccggaacaggaaaaaccgcagcctttggtatc
cctcttttgcagaagatagatattaagaacaaaaaacttcaggcgatcgtgctctgcccc
acaagagagcttgcaattcaggtagctgacgagatccgtaacctggcaaagtacctgcac
ggcatcaaagtcctccccatctacggcggtcaggacattgtaaagcagatccgttccctg
aaaaatggaacacagcttatcatcggaactccgggccgtgtcatggaccacatgcgcaga
aaaaccctgaaaatggatgatgtgcacacagttgttctggatgaggctgatgaaatgctc
aacatgggattccgcgaagacattgaaacgatcttaagcggtgttccggaagaacgccag
accgttctcttttcagccaccatgccaaagccgatcctggagatcactaaaaaattccag
aaggatgccgaagtcatcaaggtgacaaaaaaagagctgactgtccccaatatcgaacag
ttctactatgacgtaaagcctaaaaacaaagaggaagtgctctcccgccttctggacctc
tactctccaagactctctgtcgtgttctgcaacaccaaaaaacaggtagaccttttagtc
aatgccctgatcggcagaggatactttgccgcaggcctgcacggggatatgaagcaggct
cagcgtgaccgtgttatgcagagcttcagaaaaggaagaaccgacattctggttgccaca
gatgtagctgcccgcggtattgatgtggatgacattgaagctgtatttaattatgatctt
ccccaggacgacgaatactatgtacaccggatcgggcgtacaggacgtgcgggaagaggc
ggccgtgccttcacatttgccagcggaagagagctttacaaattaaaagagatccagcgc
tactgcaagactaagatctacgcgcagaaggttccctctttaaacgacgtggccaacacc
aagatggaaaacattttggaaaatgtggattctgtcattgaaagagaaaatctctccctt
atgatcgacgccattgatgagaaagtcaacaactctgactacaccaccttagacctggct
gctgctctgctgaagctgtatatgggcatggtacaggaggagccggaggaagaagccgtt
gatttcggtgataccggcgcagaggaacccggtatggtacgtctcttcatcaatataggt
aaaaagcagcgtgtccgccccggcgatatcctgggtgccattgcaggggaaagtggaatg
ccgggcaagctcatcggaagcattgacatgtttgacaaatacacctttgtggaagtcccc
agagaatacgccaaagatgtgctgaatgccatgaaaactgccaaaataaaaggaaacacc
atagccattgaaccagccaaccagaggtag
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