KEGG   Sutcliffiella cohnii: BC6307_02060
Entry
BC6307_02060      CDS       T06787                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
bcoh  Sutcliffiella cohnii
Pathway
bcoh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bcoh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BC6307_02060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bcoh03019]
    BC6307_02060
Messenger RNA biogenesis [BR:bcoh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BC6307_02060
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_6 DUF6799
Other DBs
NCBI-ProteinID: AST90150
UniProt: A0A223KKY4
LinkDB
Position
complement(445587..447254)
AA seq 555 aa
MNENTLSIFALGGMNEIGKNMYVVQYSDDIIVIDCGGKFPDETLLGIDLIIPDLTYLEEN
KDKIRALIVTHGHEDHIGGIPYFFKKLNVPVYATRFTLGLIELKLEEHRLLRDTELVTIT
PDSELQFGTIGVSFFRVSHSIPDCLGIVFHTPEGNVVHTGDFKFDLTPADNQKVDINKMA
RIGDKGVLALISESTNAERPGLTPSEQMVASHMNEAFMKATGKIFVSTFASNVSRVQQVV
DAAKNTNRKLALLGRSMVNVVSVAMERGYLTIPEGMLMDAKEVEQLPPEKVAILCTGSQG
EPNAALARLATGNYRDVNIYADDTIIFAASPIPGNEKDVSRVIDNLFKLGAHVIYGSGSS
TGMHVSGHGYQEDLKLMLTFMKPKYFIPIHGEYRMLHHHRLLAESVGIEPGNTFIMKNGE
VMDIQHGVARQTRTIPAGDTFVDGVGVGDIGSVVLRDRKQLSEDGMLITVITLSRSEQKI
ISGPDTITRGFVFAKESDALLREVNKLVKQAVNDLENEERRQWNILKQSIKKSVGQFLFS
KTKRKPMIIPIIIEI
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaacgaaaatactctatccatttttgctttaggcggaatgaatgaaattggcaaaaac
atgtacgttgtgcagtactccgatgacattatcgtcattgactgtggtgggaaatttccg
gatgaaacgttattaggtatcgatttaattattccggatcttacatacttggaagaaaat
aaagacaaaattagagctttaatcgtcacgcatggacatgaagatcatattggagggatt
ccgtacttttttaaaaaattaaatgttcctgtttatgcaacacgtttcacattagggtta
attgagttaaaactagaggaacatagacttcttagggatacagagctagtgacaatcact
cctgattctgaattacaattcggtactatcggtgtttccttttttagagtgagtcatagt
attcctgattgtttagggattgttttccatactccggaaggaaatgtagtccatacagga
gattttaaatttgatttaactcctgctgataatcaaaaagtcgatattaataaaatggct
cgtattggtgataagggtgttttagctttaatatcagaaagtacgaatgcagaacgccct
ggcctaactccatcggaacaaatggtagcaagccatatgaatgaggcatttatgaaagca
actggtaaaatttttgtatccacgttcgcatcaaatgttagtcgtgttcagcaagtagta
gatgctgctaaaaacacaaatcgaaagcttgccctattaggaagaagtatggtgaacgtt
gtttctgttgcgatggaaagagggtatttaacaattccggaagggatgttaatggatgca
aaagaagtggaacagttacctccagaaaaagtagcgatactttgtactggtagtcaaggt
gaaccgaatgctgcccttgcacgtttagcaactggaaattaccgagacgttaatatttat
gctgacgatactattatctttgcagcatcccctatccctggtaacgaaaaagatgtctca
cgcgtcatcgataacctattcaaattaggagcacacgttatttatggatcaggaagctca
acaggtatgcacgtttccggacatggctaccaagaagatttaaaattaatgttaacattt
atgaaacctaaatattttattccaattcatggcgaatatcgaatgctacaccaccaccgg
ttattagcagaatcggtcggcattgagcctggcaatacttttattatgaaaaatggagaa
gtgatggatattcagcatggagttgcacgccagacgagaacgattcctgctggtgatacg
ttcgttgacggagtaggtgttggagatatcggttctgtcgtattacgtgatcgtaagcaa
ctttctgaagatggaatgctcattacggttattacactaagtagatcagagcaaaaaatc
atctctggaccagataccattactcgcggatttgtgtttgcaaaagaatcagatgctctc
ctcagggaagtgaacaaactagtaaagcaagcagtaaatgacttagaaaatgaggaaaga
cgacaatggaatatattaaaacaatcgataaaaaaatctgttggtcaatttttattttca
aaaacaaaaagaaagccaatgattatccccattatcattgaaatttaa

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