Sutcliffiella cohnii: BC6307_02060
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Entry
BC6307_02060 CDS
T06787
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bcoh
Sutcliffiella cohnii
Pathway
bcoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC6307_02060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoh03019
]
BC6307_02060
Messenger RNA biogenesis [BR:
bcoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BC6307_02060
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
DUF6799
Motif
Other DBs
NCBI-ProteinID:
AST90150
UniProt:
A0A223KKY4
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All DBs
Position
complement(445587..447254)
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AA seq
555 aa
AA seq
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MNENTLSIFALGGMNEIGKNMYVVQYSDDIIVIDCGGKFPDETLLGIDLIIPDLTYLEEN
KDKIRALIVTHGHEDHIGGIPYFFKKLNVPVYATRFTLGLIELKLEEHRLLRDTELVTIT
PDSELQFGTIGVSFFRVSHSIPDCLGIVFHTPEGNVVHTGDFKFDLTPADNQKVDINKMA
RIGDKGVLALISESTNAERPGLTPSEQMVASHMNEAFMKATGKIFVSTFASNVSRVQQVV
DAAKNTNRKLALLGRSMVNVVSVAMERGYLTIPEGMLMDAKEVEQLPPEKVAILCTGSQG
EPNAALARLATGNYRDVNIYADDTIIFAASPIPGNEKDVSRVIDNLFKLGAHVIYGSGSS
TGMHVSGHGYQEDLKLMLTFMKPKYFIPIHGEYRMLHHHRLLAESVGIEPGNTFIMKNGE
VMDIQHGVARQTRTIPAGDTFVDGVGVGDIGSVVLRDRKQLSEDGMLITVITLSRSEQKI
ISGPDTITRGFVFAKESDALLREVNKLVKQAVNDLENEERRQWNILKQSIKKSVGQFLFS
KTKRKPMIIPIIIEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaatactctatccatttttgctttaggcggaatgaatgaaattggcaaaaac
atgtacgttgtgcagtactccgatgacattatcgtcattgactgtggtgggaaatttccg
gatgaaacgttattaggtatcgatttaattattccggatcttacatacttggaagaaaat
aaagacaaaattagagctttaatcgtcacgcatggacatgaagatcatattggagggatt
ccgtacttttttaaaaaattaaatgttcctgtttatgcaacacgtttcacattagggtta
attgagttaaaactagaggaacatagacttcttagggatacagagctagtgacaatcact
cctgattctgaattacaattcggtactatcggtgtttccttttttagagtgagtcatagt
attcctgattgtttagggattgttttccatactccggaaggaaatgtagtccatacagga
gattttaaatttgatttaactcctgctgataatcaaaaagtcgatattaataaaatggct
cgtattggtgataagggtgttttagctttaatatcagaaagtacgaatgcagaacgccct
ggcctaactccatcggaacaaatggtagcaagccatatgaatgaggcatttatgaaagca
actggtaaaatttttgtatccacgttcgcatcaaatgttagtcgtgttcagcaagtagta
gatgctgctaaaaacacaaatcgaaagcttgccctattaggaagaagtatggtgaacgtt
gtttctgttgcgatggaaagagggtatttaacaattccggaagggatgttaatggatgca
aaagaagtggaacagttacctccagaaaaagtagcgatactttgtactggtagtcaaggt
gaaccgaatgctgcccttgcacgtttagcaactggaaattaccgagacgttaatatttat
gctgacgatactattatctttgcagcatcccctatccctggtaacgaaaaagatgtctca
cgcgtcatcgataacctattcaaattaggagcacacgttatttatggatcaggaagctca
acaggtatgcacgtttccggacatggctaccaagaagatttaaaattaatgttaacattt
atgaaacctaaatattttattccaattcatggcgaatatcgaatgctacaccaccaccgg
ttattagcagaatcggtcggcattgagcctggcaatacttttattatgaaaaatggagaa
gtgatggatattcagcatggagttgcacgccagacgagaacgattcctgctggtgatacg
ttcgttgacggagtaggtgttggagatatcggttctgtcgtattacgtgatcgtaagcaa
ctttctgaagatggaatgctcattacggttattacactaagtagatcagagcaaaaaatc
atctctggaccagataccattactcgcggatttgtgtttgcaaaagaatcagatgctctc
ctcagggaagtgaacaaactagtaaagcaagcagtaaatgacttagaaaatgaggaaaga
cgacaatggaatatattaaaacaatcgataaaaaaatctgttggtcaatttttattttca
aaaacaaaaagaaagccaatgattatccccattatcattgaaatttaa
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