Sutcliffiella cohnii: BC6307_12325
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Entry
BC6307_12325 CDS
T06787
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bcoh
Sutcliffiella cohnii
Pathway
bcoh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcoh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BC6307_12325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoh03019
]
BC6307_12325
Messenger RNA biogenesis [BR:
bcoh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BC6307_12325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Neugrin
Motif
Other DBs
NCBI-ProteinID:
AST92004
UniProt:
A0A223KRM1
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All DBs
Position
complement(2489262..2490929)
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AA seq
555 aa
AA seq
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MDATKKEKIKLFSLGGVGEVGKNMYVLEVGEHIYVVDCGVMIPEDGMFGIDMVMPDITYL
EDNVDKVRGIFLTHGHEDHIGALPFVLRKVQAPVYGTKLTLELAKDLTQKESNYNEFKFV
EVTSNTVLSFPNVTVQFFSANHSIPDSVGISFKTEQGAIVYTGDFKFDQSLTGGNNTDIG
KIANIGNEGVLCLLSDSLNAEKPGNTISESVVQREISDVFYHTTTRIFVSCLATNIQRIQ
QVVNAAEETGRKLVIISSNSNKILEIAKKLNYLQIPDDLVIPASEISKYDDNKIVVLTVG
THAQMLVSLTKMAKGTHKYVQIKEDDTVLIATSPIPGMELNVSKVIDKLFRAGANVIYGQ
RKIHVSGHASQEELKLMINLVKPKYLLPIQGEYKMQMALAKVAESTGLTADSIFLTEKGD
VIEFINGEAKHGGKVPAGNTLIDGLGVGDIGNIVLRDRRLLSQDGILIVVVTISKEKKLI
VSGPEIISRGFVYVRESEKLLEDASELVKKIMDENIKGKVIEWSTLKLSIRESLNQYFFE
KTRRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttggatgcaacaaagaaagagaaaattaaattattctcccttggtggggtaggagaagtt
ggtaaaaacatgtatgtgctagaagttggggagcatatttatgttgttgattgtggggtt
atgataccagaggatggtatgtttggtatcgatatggtaatgccggatattacttattta
gaagataatgttgataaagtacgtggtatctttttaacacatggacatgaagatcatatt
ggggcacttccgttcgtactaagaaaagttcaagcacctgtttacggtacgaaattaact
ttagaattagcaaaagatctaacgcaaaaagagagtaattataatgaatttaaatttgta
gaagtgacaagtaatacagttctatcttttccaaatgtaaccgttcaatttttctctgcg
aatcatagtattcctgactctgttgggatttcgtttaaaaccgaacagggagcaatcgtt
tatacaggcgactttaaatttgaccaatctttaacaggtggaaataatacagatattgga
aaaattgcgaatattggtaatgaaggagtcttgtgtttactaagtgacagcttaaatgca
gaaaaaccaggcaataccatttcagaaagcgttgttcaaagagaaatttctgacgtattt
tatcatactacgactagaatattcgttagttgtttagctacaaatatccaaagaatacaa
caagtcgtcaatgctgcagaggaaactggtcgtaagctcgtcattattagttcgaattca
aataaaattttagaaattgcaaaaaaattaaattacttacaaattccagacgaccttgta
attccagcaagtgaaatatctaaatatgatgataataaaatagtagttttaacagtaggt
acacatgctcaaatgttagtgtccttaacaaaaatggcaaaaggtacacataaatatgtt
caaattaaagaggacgacacagtcctaattgcaacctctccgattccggggatggaatta
aatgtatcaaaagtaattgataaattattccgtgctggtgcgaacgtaatctatgggcaa
cgaaaaatacatgtatctggacatgcttcacaagaagagttgaaattaatgattaatctc
gttaaacctaaatatttattacctattcaaggagagtacaaaatgcaaatggcattagca
aaggttgctgaaagtactggccttactgccgactccattttcttaacagaaaaaggcgat
gttattgaattcataaatggagaagcgaaacatggtggtaaagtacctgcagggaatact
ttaattgatggtttaggtgttggagatataggtaatattgtgttaagagatagaagactt
ctttcacaagatggaattttaatcgttgttgttacgattagtaaagagaaaaagttgatt
gtttcaggtcctgaaattatctcacgagggtttgtatacgtaagagaatcagaaaaattg
ttagaagatgcaagtgaacttgtaaagaaaataatggatgaaaatattaaaggtaaagta
attgaatggtctacattaaagttaagtatcagagaatcgttaaaccaatatttctttgag
aaaacgagaagaagaccgatgattttacctattattatggaagtttaa
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