Borrelia coriaceae: bcCo53_000378
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Entry
bcCo53_000378 CDS
T08173
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bcoi
Borrelia coriaceae
Pathway
bcoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
bcCo53_000378 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoi03021
]
bcCo53_000378 (rpoC)
03400 DNA repair and recombination proteins [BR:
bcoi03400
]
bcCo53_000378 (rpoC)
Enzymes [BR:
bcoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
bcCo53_000378 (rpoC)
Transcription machinery [BR:
bcoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
bcCo53_000378 (rpoC)
DNA repair and recombination proteins [BR:
bcoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
bcCo53_000378 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UPA16249
LinkDB
All DBs
Position
complement(398803..402936)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKEIKDFEKIRIKIASPDQIRSWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSIRYKGIICDRCNVEVTHFKVRRERMGHIELSAPVAHIWYYKYIPSRIGLLLDI
TASNLNSILYYEKYIVIEPGDTDLKKMQLLNEDEYSEAKERYGMSFSASMGAEAIKTLLE
NLDLDELSSKLRLQMIDKDDKTDKKLLRRLEIIENFKISGNKPEWMIMDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGTSNRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGIPAK
MALELFKPFVIRKLIESESVFNIKRAKSLIEQEVDEVWQILDNVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPAAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMERKNVEGEGRKFSNFNHVLLAINNKSLDYNARIYVK
VNGEYIETTAGCVVFNEALPGEIAFVNKTLSDYELQNLISEVYVVYGSSVVIEMLDIIKE
LGFKYATKFGCTISMSDIIVPAEKKVYVDKANREIAKIQNDYTKGVITGEERYNNVISVW
SKTNEELTNKMMEILKRDKDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVGALKNGEEIVEPLREKAVGSYSIERIKSPITGEIILDVNEEITEDKIKLLETVGI
DNLVIRSVLTCEAEHGVCQKCYGRDFSNNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKITSKNPFILNGLEGFNVEVAGGLLFTRKGTLRVINVIYEEDIKEVKDL
KVLDSQKVIKGMPLFTGKDGIDVLSSHIGYVRIKDDKLMIVSEEQEISLKTGTKLEINVG
DYVEAGRVIGTFDPFAEPIIAEVKGKVRFKDIILGTTLKEEINLETGNIEKRITDQVFES
LDPRILIIDDRGIEISSYVLPGDAYLQVEDGQGINIGDIIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGIVQFRAIQKGKRLINVLDEYGVEHKHYIPAGKHLLVRDGD
VVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVSVGDTNFVYNQKVDKHAFYEQNRRVIEQGGEPAVASPILIGITKASLNIDSFISA
ASFQETTKVLTDASIAGSINDLKGLKENVVIGHLIPTGTGMSLYKRVKVRENTSSEV
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagataaaagattttgaaaagataagaataaagatagcatctcctgatcagatt
aggagttggtcttatggagaagttaaaaaatctgaaactattaattatagaactttgcgg
cctgagaaggatggtcttttctgtgagagaatttttgggactactaaagaatgggaatgt
tattgtggaaaattcaagtcaataaggtacaaaggtattatttgtgatcgttgtaatgtt
gaagtgactcattttaaagttaggcgtgagagaatggggcatattgagctttcagctcct
gttgctcatatctggtattataaatatattccatccagaattggacttttacttgacatt
actgcttctaatttaaactctattctttattatgagaaatatatcgtaattgaaccaggt
gatactgatcttaagaagatgcaacttttaaatgaggatgaatactctgaagcaaaagag
agatatggaatgtcttttagtgcctcaatgggtgctgaggcaattaaaactttacttgag
aatcttgatcttgatgaattgtcatctaagcttagacttcaaatgattgataaagatgat
aagactgataaaaagcttttaagacgtcttgaaattattgagaattttaaaatttccggg
aataagccagaatggatgatcatggatgttcttcctgttattccgccagagattagacct
atggttcagcttgatggtggcagatttgcaacctctgatcttaatgatctttatagaaga
gtaataaatagaaataataggttaagaaaacttttgcttcttaatgcacctgaaattatt
gttagaaatgaaaaaagaatgttacaagagtcggttgattctctttttgataattcacat
aagagaaaagttgttaaaggtacatccaatagaccacttaaatctctctctgatgcatta
aaaggtaagcaaggtagatttaggcaaaaccttcttggtaagagagttgattattcagga
cgttctgtaattgttgttgggcctgaacttaagttgcatcagtgtggtattcctgctaag
atggcgcttgagctttttaaaccgtttgtaattagaaaattgattgagagtgaatccgta
tttaatataaagagggcaaagagtttaattgaacaagaagtagatgaggtttggcagatt
ttagacaatgttattaaagaacatcctgtgcttttaaaccgagctccaacactgcataga
ttgggaatacaagcttttgaaccagttttagttgaaggaaaggcaattaaattacatcct
cttgtttgtcatgcatataatgctgattttgatggcgatcagatggctgtacatgttcct
ttaacgcctgcagcacaggctgaaagttgggctttgatgttgtcaactaataatttgtta
aatcctgcaaatggacatccgattgtattcccatctcaagatattgtattaggtctttat
tatttaactatggagagaaaaaatgtagagggagaaggacgtaaattttccaattttaat
catgttcttcttgcaataaataataaaagtttagactataatgcacggatttatgtaaag
gttaatggtgagtatatagagactactgcaggctgtgttgtatttaacgaggctttacca
ggggagattgcatttgtaaataaaactcttagtgattatgagttgcaaaatttgatttct
gaggtttatgttgtgtatggttcttctgttgtaattgagatgctagatattattaaagag
cttggatttaaatatgctaccaaatttggatgtacaataagtatgagtgatattattgta
cctgcagagaaaaaagtatatgtagataaagctaatagagagattgcaaaaattcagaat
gattataccaaaggcgttattactggagaagagagatataataacgttatttctgtttgg
tcaaaaacaaatgaagaacttaccaataagatgatggaaattcttaagagagataaagat
ggatttaatgtaatctatatgatggctgactctggtgctcgtggaagtagaaatcagata
agacagcttgcagggatgagaggattaatggctaagacctctggcgatattattgagctt
ccgattatttctaattttaaagaaggtctttctgttatagagtttttcatttctacaaat
ggcgcaaggaaaggacttgcagatacagctcttaagactgcagatgctgggtatttaaca
cgaagattagtagatattgctcaagatgttgttgttcgaatagaagattgtgggactatt
aatggcataaaagttggagctttaaaaaatggtgaagaaatagttgagcctttaagagaa
aaagcggttggtagttattcaattgagagaataaaaagtcctattacaggtgagattatt
ttagatgtaaatgaagagattacagaagacaagataaagttattggaaactgttggtatt
gacaatcttgttattagatctgttttgacttgtgaagctgagcatggtgtttgtcaaaaa
tgttatggtagggatttctcaaataataagcctgttaatattggagaggctgttggaata
atagctgctcagtcaataggtcagccaggaacacagcttaccatgagaacttttcatatt
gggggtgttgcacaagctggtagtgaagatgataagattacaagtaaaaatcctttcatt
cttaatggcttagagggatttaatgtagaagttgctggtggcttgctttttacaagaaag
ggcactttaagagtaatcaatgttatttatgaggaagatattaaggaagttaaagatctt
aaggtattagattctcagaaagtaattaaaggaatgcctttatttacgggtaaggacggt
attgatgtattatcatctcatattggttatgttagaattaaagatgataaattaatgatt
gtctctgaagagcaggaaatatctttaaagactggtacgaaacttgaaataaatgttggt
gattatgttgaggctggacgtgtaattggaacatttgatccatttgcagagccaattatt
gctgaggttaaggggaaagttagatttaaagatattattttaggaacaactcttaaagag
gagataaatcttgaaacgggaaatattgaaaaaagaattacagatcaggtttttgagtct
cttgatcctaggattttaattattgatgacagaggaattgagatttcttcttatgttctt
cctggagatgcttatcttcaagttgaagatgggcaaggtattaacataggtgacattatt
gctaagctttctaaaggttctgagaaaacacaagatattactggtggtcttcctagggtt
aatgatttatttgagacaagaattccaaaaaatttaaccgaaatggctaaggtaagtggc
attgttcagtttagagcaattcagaaaggaaaaagacttattaatgttttagatgagtat
ggggttgaacataaacattatattcctgctggaaaacatcttctagttagagatggagat
gttgttaaagctggagatatgctttgtgatggaagaattaatccccatgatgttcttgaa
attcttggtggaattagtttgcaggagtttttgttggcggaaattcaagatgtttatcga
aagcaaggtgtaagtattaatgacaaacatattggtgtaatcattaaacagatgatgaaa
aaagttaagattgtgtctgtaggtgatactaattttgtttataatcaaaaggtagacaaa
catgctttttatgagcaaaatagaagggtaattgaacaaggtggtgagcctgcagtagct
agtccaattcttattggtataacaaaggcatcccttaatatcgattcatttatttcagcc
gcttctttccaagaaacaactaaagttttaacagatgcttcaattgcaggtagtattaat
gatcttaaaggtcttaaagagaatgttgttattggacatttaattcctacaggaacaggt
atgagtttatataaaagagttaaggtgagggaaaatacaagttctgaagtgtaa
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