Borrelia coriaceae: bcCo53_000714
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Entry
bcCo53_000714 CDS
T08173
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bcoi
Borrelia coriaceae
Pathway
bcoi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcoi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
bcCo53_000714 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoi03021
]
bcCo53_000714 (rpoD)
Transcription machinery [BR:
bcoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
bcCo53_000714 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
UPA16556
LinkDB
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Position
752899..754791
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AA seq
630 aa
AA seq
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MNSVENKDLQAFKKKNSKIIKDILSHLGDKKAITFEDLSIFLSGDMLESENIDYIYGVLE
HEGISLINEKMETDICDIDEFDEASKLDSQCMMIDDSVHSDDDVDDKLDEFDDEILDKED
FSSGYIKSGLLKDSNSEDPIRLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNEG
LVIENYYNLVDAIYSRVDKEEFFKKDKEREKDNSFDYYNKKKRITSFYKASLKPFQDRLI
KYIENKRRLYELGEDIFEESINNERLCIKEMLKSVPLYQEELRIFADDYIDSASKIRDLK
RQQKSILDRLKIDKVRNLRILGRDLAIPERRERIEKALNMREDLIKEQITEAQLAQKELE
RIEMYYEYPMDKIISMSEEILKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLV
QEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNR
ETRYLVQVLGKDPTDEELSARLGWDLKKVKTVKNVSREPVSLETPIGEEEDSVLSDFIED
KAIKNPAKHTSFVVLQDQIRSVLGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRE
RIRQIESKALRRLKNPKKTQKLKDYLEDLN
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgtagaaaataaagatttacaggcttttaagaaaaagaattcaaaaataata
aaggacattttaagtcatttgggagacaaaaaggcaattacttttgaggatttgtccatc
tttttatcaggtgatatgttggaatctgaaaatattgattatatttatggagttcttgaa
catgaggggataagtttgattaatgaaaaaatggagactgatatatgtgatattgatgaa
tttgatgaagcaagtaaacttgatagtcagtgtatgatgatagatgattctgttcacagt
gatgatgatgttgatgataaattagatgaatttgatgatgagattttagataaggaagat
tttagttcagggtatattaagagtggtttattaaaagatagtaattctgaagatccgata
agactttatttaaaggaaataggaaaagaatttttgttaactggaaatcaagaagttgag
cttgcaaagcaaatggattctggtgagagcataattgagaatattcttaaaaatgaagga
ctggttatagaaaattattataatttggttgatgctatttattcaagggtagacaaagaa
gaattttttaagaaagataaggaaagggaaaaagataatagttttgattattataacaaa
aaaaaaaggatcacttctttttataaagcttcattaaaaccatttcaggatcgtttgata
aagtatattgaaaataaacgtagattgtatgaacttggagaagatattttcgaggagagt
attaataatgagaggctttgtataaaagaaatgcttaagtctgttcctttatatcaagaa
gagttacgaatttttgcagatgattacattgattctgctagcaaaataagagatttaaaa
aggcagcaaaagtctatattggacagattaaagatagataaagtacgtaatcttagaatt
ttggggagagatttagctattcctgagagacgggagagaatagagaaagctttaaatatg
cgagaagatcttattaaagaacaaattacagaagctcaacttgctcaaaaggagcttgag
aggattgagatgtattatgaatatccaatggataagataataagtatgtccgaagaaatc
cttaagggtaagcagatgatgcaacatgcaaaagatcagttaattaaggctaacttgaga
cttgtggtaagtattgctaaaaagtatgctaatagaggattgcatttttttgatcttgtt
caagagggtaatattggtttaattaaggcggttgaaaaatttgagtataagcgaggcttt
aagttttctacttatgctacatggtggattcgtcaagcaataacgaggtcaatttcagat
caggctcgtaccattcgtgtgcctgttcacatgattgaacagataaatagattgaataga
gagacaagatatttggttcaagtattaggtaaagatccaacagatgaagaattatcagct
agacttgggtgggatcttaaaaaggtaaaaactgtaaaaaatgtttcaagagaacccgtt
tcgcttgaaactccgattggggaagaagaagattctgtgcttagtgattttattgaagat
aaggctataaaaaatccggcaaaacatacatcttttgtggtcttacaagatcaaataaga
tcagttcttgggactcttccagaaagagaacaggaagttgtgaagatgagatttggtctt
gaagatggatattctttaactcttgaagaagttggattgcattttaacgttacaagagaa
agaattaggcagattgagtctaaggctttaaggcgacttaaaaatcctaaaaaaactcaa
aaacttaaagattatttagaagatttaaattga
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