Baudoinia panamericana: BAUCODRAFT_118700
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Entry
BAUCODRAFT_118700 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
bcom
Baudoinia panamericana
Pathway
bcom03018
RNA degradation
bcom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BAUCODRAFT_118700
09123 Folding, sorting and degradation
03018 RNA degradation
BAUCODRAFT_118700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcom03019
]
BAUCODRAFT_118700
03041 Spliceosome [BR:
bcom03041
]
BAUCODRAFT_118700
Messenger RNA biogenesis [BR:
bcom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BAUCODRAFT_118700
mRNA degradation factors
5'-3' decay
Lsm complex
BAUCODRAFT_118700
Spliceosome [BR:
bcom03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
BAUCODRAFT_118700
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Gemin6
Motif
Other DBs
NCBI-GeneID:
19107353
NCBI-ProteinID:
XP_007672167
JGI:
Bauco1_118700
UniProt:
M2M1Q2
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MSLNSYLNKKVCIITVDGRTLTGTLVSCDQVTNVVLKDTIERIIRPTDDEEPSIEQPHGL
YLVRGDNVVICGLVDEELDNSIDWTKVRGEVIGSTKHV
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcaactcatatctcaacaagaaagtatgcatcataaccgtggacggccggacg
ctaacgggtacccttgtatcctgcgaccaagtcacgaacgtggtgctcaaggacaccatt
gagcgcattatccggcccacagatgacgaggagccttccattgagcagcctcatggcttg
tatctcgtacgtggcgacaatgttgtcatttgcggtctcgtagacgaggagctggacaac
agtatcgattggacgaaggttcgaggagaggtcattgggagcaccaagcatgtttag
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