KEGG   Baudoinia panamericana: BAUCODRAFT_122769
Entry
BAUCODRAFT_122769 CDS       T03106                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
bcom  Baudoinia panamericana
Pathway
bcom03018  RNA degradation
bcom03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bcom00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    BAUCODRAFT_122769
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BAUCODRAFT_122769
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bcom03019]
    BAUCODRAFT_122769
   03041 Spliceosome [BR:bcom03041]
    BAUCODRAFT_122769
Messenger RNA biogenesis [BR:bcom03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     BAUCODRAFT_122769
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     BAUCODRAFT_122769
Spliceosome [BR:bcom03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    BAUCODRAFT_122769
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 19107712
NCBI-ProteinID: XP_007676691
JGI: Bauco1_122769
UniProt: M2ND03
LinkDB
Position
Unknown
AA seq 125 aa
MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTYMNLTLKEVVQTSPEGDKFFRLPECY
VRGNNIKYLRVPDEIVDIVKDQQQSQQSQRGGRGGMQHRGDHGGRGDRGGRGGRGGRGRG
RGRGG
NT seq 378 nt   +upstreamnt  +downstreamnt
atgcttcccctcggcctgcttactgcggcgcaaggccaccccatgttggtcgagctcaag
aatggagaaacgttgaacggccatcttgtcaattgcgacacatacatgaacctgactttg
aaagaagtcgttcaaacaagtccggagggcgacaaattcttccggttaccagaatgctac
gttcgcgggaataatatcaaatacctacgagttccggacgaaatcgtggatatcgtcaag
gaccagcagcagagtcaacagtcgcagcgtggaggcagaggcggtatgcagcaccgaggt
gaccacggcggcaggggtgacagaggagggcgaggcggacgtggcggacgtggaagaggg
aggggacgaggcggttga

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