Baudoinia panamericana: BAUCODRAFT_127288
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Entry
BAUCODRAFT_127288 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
bcom
Baudoinia panamericana
Pathway
bcom03018
RNA degradation
bcom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BAUCODRAFT_127288
09123 Folding, sorting and degradation
03018 RNA degradation
BAUCODRAFT_127288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcom03019
]
BAUCODRAFT_127288
03041 Spliceosome [BR:
bcom03041
]
BAUCODRAFT_127288
Messenger RNA biogenesis [BR:
bcom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BAUCODRAFT_127288
mRNA degradation factors
5'-3' decay
Lsm complex
BAUCODRAFT_127288
Spliceosome [BR:
bcom03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
BAUCODRAFT_127288
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
19108127
NCBI-ProteinID:
XP_007681727
JGI:
Bauco1_127288
UniProt:
M2MJC6
LinkDB
All DBs
Position
Unknown
AA seq
83 aa
AA seq
DB search
MASQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYSGAQTKLP
KILLNGNNICMLIPGGMPEASEG
NT seq
252 nt
NT seq
+upstream
nt +downstream
nt
atggcatctcaattactaccgctggagctcatcgatcgatgtgtgggttcaccaatctgg
gtcataatgaagggcgacaaagagttcagcgggactctgttaggctttgatgacttcgtc
aacatggtactcgaagatgtaacggaatatgattactcgggagcacaaacaaagcttccc
aagatcttgctcaacgggaacaatatctgcatgctcattcctggcggtatgcccgaagcc
agtgaaggatga
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integrated database retrieval system