KEGG   Baudoinia panamericana: BAUCODRAFT_127288
Entry
BAUCODRAFT_127288 CDS       T03106                                 
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
bcom  Baudoinia panamericana
Pathway
bcom03018  RNA degradation
bcom03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bcom00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    BAUCODRAFT_127288
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BAUCODRAFT_127288
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bcom03019]
    BAUCODRAFT_127288
   03041 Spliceosome [BR:bcom03041]
    BAUCODRAFT_127288
Messenger RNA biogenesis [BR:bcom03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     BAUCODRAFT_127288
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     BAUCODRAFT_127288
Spliceosome [BR:bcom03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    BAUCODRAFT_127288
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 19108127
NCBI-ProteinID: XP_007681727
JGI: Bauco1_127288
UniProt: M2MJC6
LinkDB
Position
Unknown
AA seq 83 aa
MASQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYSGAQTKLP
KILLNGNNICMLIPGGMPEASEG
NT seq 252 nt   +upstreamnt  +downstreamnt
atggcatctcaattactaccgctggagctcatcgatcgatgtgtgggttcaccaatctgg
gtcataatgaagggcgacaaagagttcagcgggactctgttaggctttgatgacttcgtc
aacatggtactcgaagatgtaacggaatatgattactcgggagcacaaacaaagcttccc
aagatcttgctcaacgggaacaatatctgcatgctcattcctggcggtatgcccgaagcc
agtgaaggatga

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