Baudoinia panamericana: BAUCODRAFT_147755
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Entry
BAUCODRAFT_147755 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bcom
Baudoinia panamericana
Pathway
bcom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAUCODRAFT_147755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcom03019
]
BAUCODRAFT_147755
03041 Spliceosome [BR:
bcom03041
]
BAUCODRAFT_147755
03009 Ribosome biogenesis [BR:
bcom03009
]
BAUCODRAFT_147755
03016 Transfer RNA biogenesis [BR:
bcom03016
]
BAUCODRAFT_147755
Enzymes [BR:
bcom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BAUCODRAFT_147755
Messenger RNA biogenesis [BR:
bcom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
BAUCODRAFT_147755
Spliceosome [BR:
bcom03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
BAUCODRAFT_147755
Complex C
U4/U6.U5 tri-SnRNP related factors
BAUCODRAFT_147755
Ribosome biogenesis [BR:
bcom03009
]
Eukaryotic type
Pre-60S particles
Helicases
BAUCODRAFT_147755
Transfer RNA biogenesis [BR:
bcom03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
BAUCODRAFT_147755
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
STATa_Ig
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
19108796
NCBI-ProteinID:
XP_007675962
JGI:
Bauco1_147755
UniProt:
M2N197
LinkDB
All DBs
Position
Unknown
AA seq
1074 aa
AA seq
DB search
MDELFDVFDEKAPKPGSSAKKEKSKKRAADGAVKREAPHQNGDAHTVDGRETHNGEANGV
PNGDDVKVRVAKRQRRDDEPEPVVTDTFETEQSREVAASAGLQGQKEDKAVVLSHQVRHQ
VSLPPDYEYVPISQHKRPEKPAREWPFTLDPFQEVSIASIERNESVLVSAHTSAGKTVVA
EYAIAQCLQNNQRVIYTSPIKALSNQKYREFSAEFGDVGLMTGDVTINPTATCLVMTTEI
LRSMLYKGSEIMREVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVRYVFLSATIPNAMQ
FAEWITKTHNQPCHVVYTDFRPTPLQHYFFPAGADGIHLVVDEKGVFREENFNKAMSAIQ
ERAGDDGSDPMAKRKGKGKDKRTNKGGRRDGPTDIYKIVKMIMMKNYNPVIVFSFSKREC
ENYALQMSQLAFNDESEKAMVTKVFNSAIEMLSDEDKELPQIQHILPLLRRGIGIHHSGL
LPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWVTPSEFIQ
MSGRAGRRGLDERGIVIMMIDEKMEPAVAKDIVRGEQDKLNSAFYLGYNMILNLMRVEAI
SPEFMLERCFFQFQNAASVSGLEKELHELEQKRADMVVENEQEIKEYYDIRQNLNSYAAE
MKATITREEYLLKFLQSGRLVRVKYKDYDFGWGAVVNFMKVKPGRGQTAEDIPPGHAVVI
DVLMAVAADSTPPPVGARLNDDLPPGVRPPAPGEKGKMEVFSIMNGTIDAVGHLRVFLPA
ELRTQESRNTMRKTLEEVKARFPDGIAILDPIENMHITDEGFKRLLRKIEVLEHKLLNNP
LHKSERLPELYEQYAAKVELTTQIKAKRKQISDALSVLQLDELKNRKRVLRRLGFINDAD
VVQLKARVACEISTGDELVLSELLFNRFFNELTPEQCAAALSCFIFEEKSNETPTLKDEL
AKVFREIREQARQVAKVSSESKVVVNEEEYLQSFKCELMEVVFAWCQGASFATICKMTDV
YEGSLIRLFRRLEELLRQMAQAGKVMGSEELEQKFESALTKVRRDIVAAQSLYL
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atggatgagctgttcgatgtgttcgacgagaaggcgccaaagcctggcagcagcgccaaa
aaggagaagagcaagaagcgagccgcagacggcgctgtgaagagagaagcgccacaccag
aatggtgatgctcatacggtggatggacgggagacacacaacggtgaagcgaacggcgtg
cccaatggcgatgatgtgaaggtccgggtcgccaagcgacagcgcagggacgacgagccc
gagccggtggtaacggacacctttgaaacagagcagtcacgcgaggttgcagcatccgct
gggttgcaaggtcaaaaggaagacaaggctgtggtgctctcgcatcaagtacgccatcaa
gtgtctctgccaccagactacgaatacgttcccatatcgcagcacaagcggcccgagaag
cccgcgcgagagtggccgttcacgctcgaccctttccaggaggtctccatcgcatcgata
gagcgcaatgagagtgtgctagtctcggcgcacaccagcgcaggcaagacggtagtagcc
gagtacgccattgcacaatgtctgcagaacaaccagcgagtcatctataccagcccgatt
aaagcgctcagcaatcagaagtatcgggagttctctgccgagttcggtgatgttggcttg
atgaccggagacgtgacaatcaaccctacagcaacctgcttggtcatgaccacggagatt
ctacgctcaatgctgtataaaggctcagagatcatgcgcgaggtcgcttgggtggtcttt
gatgaggtgcattacatgcgcgacaagtcacggggtgtcgtctgggaggagacgatcatt
ctgctcccggacaaagtccgctatgtctttctctctgctaccatccccaatgccatgcaa
ttcgccgagtggatcaccaagacgcacaaccagccttgtcacgtggtctacaccgacttc
agaccgacacctttacaacactacttcttcccagctggcgcagatgggatccacctagta
gtcgacgagaaaggcgtcttccgcgaggagaacttcaacaaggccatgtctgcgattcaa
gaacgggccggcgatgatggcagtgatccgatggcgaagcgcaagggcaaaggaaaagac
aagcggaccaacaaaggtggccgcagggacggtccaacggacatctacaagatcgtgaag
atgatcatgatgaagaactacaatcccgtcattgtgttctccttctcgaagcgcgagtgc
gagaactacgctttacagatgagtcagctggctttcaacgatgaatcggagaaggcaatg
gtgaccaaggttttcaactccgcgatcgagatgctgtcggatgaagacaaggagctgccg
cagattcagcatatactgcctctgctacggcgcggtatcggcatccatcattcaggctta
ctacccatattaaaggagacgattgagatcttgttccaagaaggtctcatcaaagttctc
ttcgccactgaaactttttccatcggcctcaacatgccagccaagaccgttgtcttcact
tccgttcgcaagttcgacggcgtatctcagcgatgggtcacgccaagcgagttcattcag
atgtctggtcgcgccggtcgtcgtgggctcgatgaacgcggtatcgtcatcatgatgatc
gacgagaaaatggagccggcggttgcgaaagacattgtccgcggtgagcaggataaactc
aacagcgccttctatctcggctacaacatgatactcaacctcatgcgtgtcgaggctatc
agcccagagttcatgctcgagcgatgtttcttccagttccagaacgctgcctccgtttcc
ggtctcgaaaaggagcttcacgaactcgaacagaagcgtgccgatatggtggtagagaac
gaacaagagatcaaagagtattatgacattcgacagaatctaaacagctacgcagcagaa
atgaaggccaccataacacgggaggagtacctactaaagttcctgcagtctggtcgttta
gtgcgggtgaagtacaaggactacgacttcggttggggcgccgtcgtcaattttatgaaa
gttaaacctggccgcgggcaaacagctgaagacataccaccaggacacgccgtcgtcatt
gacgtgttaatggcggtggccgcagacagcacgccgccgccggtgggcgcaaggctaaac
gatgatctaccgccaggcgttcggccgcctgcacctggcgagaaaggcaagatggaggtc
ttttccatcatgaacggcaccattgacgcagtgggccatcttcgagtgttcttacctgcc
gagctccggacccaagagagccggaacacaatgcggaagacgctcgaagaggtgaaagca
cggttcccagatggcattgcgatcttggatccaattgagaacatgcatatcactgacgaa
gggtttaagcggttactcaggaagattgaggtattggagcacaagctgctcaacaacccc
ttgcacaaatccgagcgattaccggaactgtacgagcaatacgcggcaaaggtagaactg
acaacgcagatcaaggcgaagcggaagcagatctcggatgcgcttagtgtgctgcagctg
gatgagctgaagaaccgcaagcgcgtccttcgccggctgggcttcatcaacgatgcagac
gtcgtgcagctgaaggcgcgcgttgcgtgcgagatctccacgggcgacgagcttgtgctg
tccgagctgctgttcaatcgcttcttcaacgagcttacgcccgagcagtgtgcggcggca
ttgagttgcttcatcttcgaggagaagagtaatgagacgccgacgttgaaggacgagttg
gcgaaggtcttccgcgagatacgtgagcaggctcggcaggtagcgaaagtcagtagcgag
agtaaggtggtggttaatgaggaggagtatctgcagtcgttcaagtgcgaactgatggag
gtggtgtttgcgtggtgtcagggtgcgagcttcgcgacgatatgcaagatgacggacgtc
tacgaaggctcgctgatccgcctcttccgaagactggaggagctgctgcggcagatggct
caagccggcaaggttatgggaagcgaagaactagagcagaagttcgagtcggctctgacg
aaggtcaggagggacatcgtggcagcccagtcattgtatctataa
DBGET
integrated database retrieval system
