Baudoinia panamericana: BAUCODRAFT_228826
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Entry
BAUCODRAFT_228826 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
bcom
Baudoinia panamericana
Pathway
bcom03020
RNA polymerase
bcom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAUCODRAFT_228826
09124 Replication and repair
03420 Nucleotide excision repair
BAUCODRAFT_228826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcom03021
]
BAUCODRAFT_228826
03019 Messenger RNA biogenesis [BR:
bcom03019
]
BAUCODRAFT_228826
03400 DNA repair and recombination proteins [BR:
bcom03400
]
BAUCODRAFT_228826
Transcription machinery [BR:
bcom03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
BAUCODRAFT_228826
Messenger RNA biogenesis [BR:
bcom03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
BAUCODRAFT_228826
DNA repair and recombination proteins [BR:
bcom03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
BAUCODRAFT_228826
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
19109943
NCBI-ProteinID:
XP_007679422
JGI:
Bauco1_228826
UniProt:
M2N2B1
LinkDB
All DBs
Position
Unknown
AA seq
171 aa
AA seq
DB search
MFFVKTLEHRLTLHPSYFSAQSQAYIEEQLYREQEGKNTGTMLIIAIIDIEDVSEPKVVP
GSGLAQYDVSFRAIVWRPFRGEVVDGLVSSVISGGFFVDVGGLAVFVSKALIPPQLKFSV
EGSAPSYTDNVDQTIERGTQVRLRIKGIRAEMGQMYAIGSIREDYLGPLMQ
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgttcttcgtcaaaacactcgaacaccgcctcacactccacccttcctatttctccgcc
caatctcaggcctacatcgaggagcagctttaccgcgaacaagaaggcaaaaacacaggc
actatgctaatcattgccattatcgatattgaagatgtcagtgaaccgaaggtggtgcca
ggcagcgggctggcgcagtatgacgtctcgtttcgcgcgatcgtctggaggccgttccgg
ggcgaggtagtggatggattggtgagtagcgtgattagtggaggattctttgtggatgtg
ggtggacttgccgtcttcgtttccaaagctttaattccgccacaactcaagttctctgtc
gagggctctgcgccgtcatatacggacaatgtggaccagacgattgagcgaggcacgcaa
gtgagactcagaatcaagggcatccgggcggagatggggcagatgtatgccattggcagc
atacgggaggactatttgggtcctctcatgcaatga
DBGET
integrated database retrieval system