Baudoinia panamericana: BAUCODRAFT_366269
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Entry
BAUCODRAFT_366269 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bcom
Baudoinia panamericana
Pathway
bcom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAUCODRAFT_366269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcom03019
]
BAUCODRAFT_366269
Messenger RNA biogenesis [BR:
bcom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
BAUCODRAFT_366269
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
SURF2
U1snRNP70_N
Motif
Other DBs
NCBI-GeneID:
19113011
NCBI-ProteinID:
XP_007672652
JGI:
Bauco1_366269
UniProt:
M2MTD1
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MDTEAITSALLSTTRSASALASEDLAFHRSLSNSLASALDRQNARLLALSDRLLGVAAPN
PSAVRSRLSDIDAAEGNWRAVVDVVDSLLERADTALDEFTGAVKRLSPGAVEQMQKVGKR
QDERTKLDWRKSDIEKPQLLFENVPTNNETGPFLPLLQSKPHAMRPKEESAPGLHPYQSE
ILDYRWPAELYTTAEPSMYTPFEESTATFVDTEDAMYEMLEELKQAKEIAVDLEHHDLRS
YVGIVCLMQISTRNKDWIVDTLKPWRRKLSCLNEVFANPSILKVLHGAYMDVIWLQRDLG
LYLVGLFDTHYACRALGYAGASLAFLLKKFANVDAQKQYQTADWRIRPLPQELLDYARSD
THYLLYIFDNMRNELVQRSTFGKMDHEGDKLWDVLQKSSETALQRYEHPVYDFDLGQGTV
GWYKLLARTSATLSKEQFSVFRAVHRWRDNVAREQDDSAHYIMSNHHIFSIAKSMPTTKA
ELLGIASTQNVRLRADELLAVITQAKDDGRDGPELMDVLNKVEPQVARKPLTKEAISHSV
AAFVPRSSAATVNGESSLPLRSMTSGFWGSTLSGNSDQKRAYSAAQSVALTVPLPPLTAE
IFADPADIVSQRATQPPEEPLSAADGVVDTTTDMAEDDVFVLKQLGKKRKRPTIDGMDGL
AAQSDEVAIPEDEATERAREKAERKKARKEMKRAQKGAMFNESDPHSQEDGVVDDEPFDY
AAAPSLLNPTPSKEAREARAGRKEINPYAKSLDTPKGLSRTQREKAGRSMTYRS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgaggccatcacttccgccctcttgtccacaacccgtagtgcctccgctctc
gcaagtgaagatctcgccttccaccgctcactatccaactccctcgcttctgcgctcgat
cgccagaatgcgcgtcttctggctctttcggaccgccttctcggcgttgcggctccgaat
ccgtcggctgtacgttcccgtctgagcgacatcgacgctgcagaaggcaattggcgggcg
gtggttgacgtcgtcgatagcttgctggagcgcgccgataccgcccttgatgagtttacg
ggcgctgtgaagcggctgagtcctggagcggtggagcagatgcaaaaggtggggaagagg
caggatgaacgaaccaagttagattggaggaagagtgacatcgagaagcctcaactgctg
tttgagaatgtgccgaccaacaacgagacggggccgtttttgccattgctgcaaagcaag
ccgcatgccatgcgtcccaaggaagagtctgcacctggattgcatccataccagagcgag
atcttggactaccgttggcctgctgagctctacaccaccgccgagccgtcaatgtacact
cctttcgaagaatcgaccgcaaccttcgtcgatactgaagatgccatgtacgaaatgcta
gaggagctaaagcaggcgaaggagattgccgtcgatctcgaacatcacgatcttcgttca
tatgtcggcattgtctgcttgatgcaaatcagcacacgcaacaaggattggatagtagac
acgctcaagccatggcggcggaagctgtcatgcttgaacgaggtctttgccaatccgagc
attctcaaggtgcttcacggagcttacatggatgtcatctggctgcagcgtgacttaggg
ctgtatctcgtcggcctgttcgacacgcactacgcttgcagagcccttggctatgctggc
gcaagcctggcctttctgctcaagaaatttgccaacgtggatgcgcaaaagcagtatcag
acggctgattggcggatacgaccgctaccacaggagttgctcgattacgctcgtagcgac
acgcactatcttctctacatcttcgataacatgcgcaacgagctggtgcaacgatccacc
ttcggcaaaatggatcacgagggcgacaagctttgggacgtactccagaaaagctcagag
acggctctgcaacgctatgagcaccctgtctatgactttgaccttggacaaggcaccgtg
ggctggtacaaattgttagctcgcacttcagcaaccctcagcaaagaacagttcagcgtc
ttccgcgcagttcacagatggcgggataacgtagcgagggagcaggatgacagcgcccac
tatatcatgtctaaccatcacatcttcagcattgccaagtccatgcctaccacgaaagcg
gagctgctaggcatagcatcgacgcagaacgttcgcttgcgagccgacgagctgttagct
gttatcacacaagcgaaggatgatggtagggacggaccagagttgatggacgtactcaat
aaagtggagccacaggttgcacgtaaaccattaacgaaggaggccatatctcactccgta
gctgcatttgtaccacggagctcggctgcaaccgttaacggcgagtcaagtctgcctctc
cgcagcatgacatctgggttctggggttctacgctcagcggtaacagcgatcagaagcgt
gcttattcagccgcgcaaagtgtggcgctcacggtacctttgccaccactcaccgcagaa
atcttcgcggatcccgcagacatcgtctctcaaagagctacgcagcctcccgaggaaccc
ttgtctgctgcagacggcgttgtggacacgaccacggatatggcggaagacgatgtcttc
gtgctgaagcagcttggaaagaagcgcaagcgtcccacaatcgatggcatggacgggctg
gccgcccaaagcgacgaagtggctataccagaagatgaagcaactgagcgagcacgagag
aaagcggagcggaagaaggcgcggaaggagatgaagagggcgcaaaagggagcaatgttc
aatgaaagcgatcctcactcgcaagaggacggcgtagtggatgacgaaccctttgactat
gcggctgcaccgagcttgctcaatcctactccgtccaaggaagcccgagaagcgcgagca
gggcggaaggagattaatccctatgcgaagtcacttgatacgccgaaggggctgtcacgg
actcagagggagaaggcaggccggagcatgacctatagatcatag
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