Baudoinia panamericana: BAUCODRAFT_399389 Help Entry BAUCODRAFT_399389 CDS       T03106                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism bcom  Baudoinia panamericana Pathway bcom03013   Nucleocytoplasmic transport bcom03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:bcom00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     BAUCODRAFT_399389    03015 mRNA surveillance pathway     BAUCODRAFT_399389  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:bcom03019]     BAUCODRAFT_399389 Enzymes [BR:bcom01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      BAUCODRAFT_399389     5.6.2.5  RNA 5'-3' helicase      BAUCODRAFT_399389 Messenger RNA biogenesis [BR:bcom03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      BAUCODRAFT_399389    mRNA cycle factors     Common to processing body (P body) and stress granule      BAUCODRAFT_399389 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII DEAD UvrD-helicase NPHP3_N SLFN-g3_helicase Helicase_RecD AAA_22 nSTAND3 ATPase AAA_16 Motif Other DBs NCBI-GeneID:  19113926 NCBI-ProteinID:  XP_007674234 JGI:  Bauco1_399389 UniProt:  M2NJK5 LinkDB All DBs Position Unknown AA seq 1096 aa AA seqDB search MAGAFTHVANHLVGDSASAINEGDDISTLDAGESALDGEYGRGNLNGGPRRRRVGDDDET DVYDDDDLESLASHAVNGANGRAGQQPAEEEVELPPHACAYCGIHNPGSVVKCLTCSKWF CSARGNTSSSHIVNHLVRARHKEVQLHPSSPLGDTTLECYNCGTKNVFLLGFIPAKSDTV VVLLCRQPCAAMPSSKDMNWDTSKWQPLIEDRSFLPWLVTTPTDQEQMRARHLMPQVIAK LEEMWKENTNATIQDLEKNAGMDDEPAPVLLRYDDAYQYQNVFGPLVKIEADYDKKLKEA QSQDNLIVRWDFGLNNKHLASFVLPKLELGDVKLAVGDEMRIRYIGELRAHWEGVGYVIK IPNNVSDEVTIELRSRGDHKSVPTECTHNFTADYVWKATSFDRMQHAMKTFAIDEMSVSG YIFHRLLGHEVAAAPMKVNMPRKFSVPNLPDLNGSQINAVKSVLTKPLSLIQGPPGTGKT VTSATVIYHLSKINGGQVLVCAPSNVAVDQLCERIHKTGLKCVRVTAKSREDVDSPVSFL SLHRQVQMNDTNVELNKLQQLKAELGELSSQDEKKFKTLTRAAEREILSNADVICCTCVG AGDPRLAKFKFRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNILGCAPI RLQVQYRMHPCLSEFPSNMFYEGSLQNGITMQERLLRNVDFPWPVADAPMMFWSNLGNEE ISASGTSYLNRTEASNVEKIVTRFFKAGVKPESIGIITPYEGQRSYVVQSMQQTGTFRKE IYKEVEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGNP KVLAKHPLWHYLLLHFKERNCLVEGPLSNLQTSLLQFGKPKMSYRGPQRYQMAWQQASQM ATGPRVNGAGGPPAGRGAPGADAGSVVGYIPDDVSSVQSSALGGGAALPTGQYPPVFQGF QDTWPTLPAMQRNGLAPPGPGTPHAGGAQKHAPASVAGESVAASELTDATSAANGVVGQG GVSLAGLSINDLNKQASLSQSDKLRRYVEGQAPQQLGPIGAGRHTVNRSALGNGDEDARS VSTAFASQMGGTGGYD NT seq 3291 nt NT seq  +upstreamnt  +downstreamnt atggcaggcgcctttacgcatgtggccaaccatctcgtcggggactccgcttccgctatc aacgaaggcgacgacatctccacgctcgatgccggcgagagtgcgctggacggcgaatat ggccgcgggaatctgaacggtggcccgcgtcggagacgggttggcgacgatgatgagaca gatgtatacgatgacgatgacctggagtcactggcaagtcacgcggtgaacggtgcgaat gggcgagcgggacagcagccagcagaggaagaagttgagcttccgcctcacgcgtgcgca tactgcggcatacacaacccgggctcggtggtaaagtgcttgacgtgctccaagtggttc tgctctgctcgcgggaacacgagtagcagtcacattgtcaaccaccttgtccgcgcgcgg cataaggaagtccagctccatccttcctcaccactcggagatacaacgctggaatgctac aactgcggcacgaagaatgtatttttgcttggtttcatcccggccaagagcgacacggtg gtcgtgttgctatgccggcaaccttgcgctgccatgccgagcagcaaggacatgaactgg gatacctccaagtggcaaccgctgatcgaggatcgctcgttcttgccctggcttgtaacc acgccaaccgaccaggagcaaatgcgtgcgagacatctcatgccgcaggtcattgcgaag ctggaggagatgtggaaagagaacaccaacgcaaccattcaggatctggagaagaatgcc ggaatggacgatgagcctgcgccggtgttgctacgctacgacgatgcctaccagtatcag aacgtcttcggcccattggtcaagatcgaagcggactacgataagaaactgaaggaggcg cagtcgcaagacaaccttatcgtacggtgggacttcggcttgaacaacaagcacctcgct tcattcgtactgcctaagcttgagcttggtgacgttaaattggccgtcggcgatgaaatg cgcatccgctacatcggcgagcttcgcgcgcattgggaaggtgtcggctatgttataaaa ataccgaacaatgtctccgacgaggttaccattgagctgcgatcgcgcggcgatcacaaa tcggtacctacagaatgcacgcacaacttcacagccgattacgtctggaaggccacctcc ttcgaccgcatgcagcacgccatgaagactttcgccatcgacgagatgagtgtgagtggc tatatctttcaccgtctgctcggccacgaggtcgcagccgcgcccatgaaggtcaacatg ccgcgcaagttcagcgtgcccaaccttccagatctcaatggcagtcagatcaatgctgtg aaatctgtgttgacgaaaccgctaagcttgattcaaggtccgcctggtaccggcaagaca gtcacatccgccacggtcatctaccatttgagcaagatcaatggcggtcaagtcctcgtt tgcgcgccttccaacgtcgcagtcgaccagctctgtgagcgtatccacaaaaccggcttg aaatgtgtacgcgtgacggcgaagtcgcgcgaagatgtcgacagccctgtctccttcctc agcctgcaccgacaggtccaaatgaacgataccaacgtcgagctcaacaaacttcagcag ctcaaagccgagctcggcgagctttcttcgcaggacgagaagaagtttaaaactttgact cgcgccgctgagcgtgagattctgagcaacgcggatgtcatctgctgcacctgcgttggc gccggtgacccacggcttgcgaagttcaaatttcgcacggtcctgatcgacgagagcacg caatctgcagagccggagtgcatgatcccgcttgtcctgggctgcaagcaagttgttctc gtaggcgaccaccagcagctgggccccgtcatcatgaacatcctcggctgtgcgcccatc cgtctgcaagtccaatatcgcatgcacccttgcctctccgagttcccatccaacatgttc tacgaaggcagcctgcagaacggcatcaccatgcaagagcgccttctccgtaatgttgac ttcccctggcccgtcgcagacgcgccgatgatgttctggagtaacctaggcaacgaggag atctctgcttccggaaccagttacttgaacagaaccgaagcttcaaacgtggagaagata gttacgcgcttcttcaaggcgggcgtgaagccggaaagcatcggtattataacgccgtac gagggccagagaagctacgtggtgcagagtatgcagcaaaccggcaccttccgcaaggag atctacaaagaggtcgaagtggcaagcgtcgatgcttttcaaggacgtgagaaggacttc atcgtgctttcctgcgtgcgctcgaacgaccatcaaggcataggcttcttgtccgatcca agacggttgaacgtcgcactcacgcgtgcgaagtatgggcttgttattctgggcaacccg aaagtcctggccaagcatccgctatggcattacctgctcctgcactttaaagagcgcaat tgcttggtggaaggtccgctgagcaatttacagactagcctgctgcagttcggcaagcca aagatgtcttaccgcggaccgcaacggtaccagatggcgtggcagcaggcgagccagatg gcgacggggccgagagttaacggcgctggcgggccgcctgcaggcagaggtgctcctggt gctgatgcaggcagcgtggtggggtatattccggatgatgtctcaagtgtgcaatcgagc gcactcggcggtggtgctgcacttcccaccggccagtacccgcccgtcttccagggcttc caagatacgtggccgacattaccggctatgcagcgcaatggtctcgcaccacctggaccc ggcacccctcacgctggtggagcgcaaaagcatgctccggcgagcgttgcaggcgagagc gttgctgcgtctgagctgactgacgctacgtccgccgccaatggtgttgtgggacagggc ggggtgagtctggcaggtctgtcaatcaacgatctgaacaagcaggctagtctcagtcag agcgacaagctgcggaggtatgtggaaggtcaagcgccgcagcaattaggaccaattggg gcgggcaggcacacggtcaatcggtctgcgcttggcaacggcgacgaagacgctaggagc gtgagtacggcgtttgccagccaaatgggtgggacgggagggtacgactga

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