Baudoinia panamericana: BAUCODRAFT_59256
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Entry
BAUCODRAFT_59256 CDS
T03106
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bcom
Baudoinia panamericana
Pathway
bcom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAUCODRAFT_59256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcom03019
]
BAUCODRAFT_59256
Enzymes [BR:
bcom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
BAUCODRAFT_59256
Messenger RNA biogenesis [BR:
bcom03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
BAUCODRAFT_59256
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
19115812
NCBI-ProteinID:
XP_007673685
JGI:
Bauco1_59256
UniProt:
M2N4Z5
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MDVHNVSFYPLLLDILTDISEAHFVAVDLELSGVPTKRVRREVGKPSLQERYLETKEAAE
RYQILQFGFTCVHQDVANNKYILKPYNVDLSPLIQERGLEVERIFSFQSGAVDFLLKVGF
DISRPFYHGVPYISRDESREAREMHAKRQDKSAMADIQIKPTETESLAFLDRVRSEINGW
LQSSNTAKDDYININPIGAEGGNEDGAASDGLSRFEKRLVHQLVRAEYPDLVSLGKAGFV
QVVRFNKEREDKVAADRKRELNERINRQKGFRWVVEALLGSDITRLDLRECARDPVTGEQ
VFADMDEFSAQFHRAQTLLRGNPRVIVGHNCFLDLVYIYRTFIGQLPDSVEAFQRKLHGL
WPTIIDTKYMSTHNCGDISPVSSLEQIAAQLSAESVPKIEVDPQHDKYEAVEAFHEAGYD
SFLTAQIAVKLSSKLERE
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgcacaacgtctccttctatccgctcctgcttgatattctgaccgacatatcc
gaagctcattttgtggccgttgacctcgagctctccggtgtgcctacgaagcgagtacgc
agggaagttggcaagccgagcctgcaagagcgctacctagagaccaaagaggctgccgag
cggtaccagatactgcagttcggtttcacctgcgtccatcaggatgtggcgaacaacaag
tacatcctcaaaccgtacaacgtcgatctcagccccctcatccaagagcgtggtctggaa
gtcgagcgcatcttctccttccaatctggggccgtagacttcctgctcaaagtcggcttc
gacataagccgaccattttaccacggcgtgccttatatctctcgcgatgagtcacgggag
gctcgcgagatgcacgctaagcggcaagataagtctgcaatggctgacattcagatcaag
cctactgaaaccgagtcgctggccttcctagaccgcgtcaggtcggaaatcaacggctgg
ctgcagtctagcaacactgcgaaagacgactacatcaatatcaacccaataggtgccgaa
ggaggtaacgaagacggcgctgcttccgacgggcttagtcggtttgagaagcgcctcgtc
catcaattggtacgcgcagaatatccggacctcgtatctctgggcaaagccggcttcgtc
caggtcgtacgcttcaacaaagagcgcgaagacaaggtcgcggcagatcgaaaacgcgag
cttaacgagcggatcaaccgtcagaaaggcttccggtgggttgtcgaggctcttttgggc
agcgacattacgcgattagatctccgcgaatgcgctagggatccagtcactggcgagcag
gtcttcgccgacatggacgagttctccgctcagttccaccgcgctcagactcttctgcgt
ggcaatccgcgcgtcattgtaggccacaactgctttctcgacctggtatacatctatcgc
accttcatcggacagttacctgacagcgttgaggcttttcagcgtaaattgcacggtctc
tggcctaccatcatcgacacgaagtacatgtctacccacaattgcggcgatatcagccca
gtctcatcgctcgagcagatcgctgctcagcttagcgcagagagcgtaccgaagatcgaa
gttgatccacagcacgacaagtacgaagccgtagaagcattccatgaggccggctatgac
agctttctgaccgctcagatcgctgtaaagttgtcaagcaagcttgagcgcgaa
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