Burkholderia contaminans: NL30_07765
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Entry
NL30_07765 CDS
T03969
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bcon
Burkholderia contaminans
Pathway
bcon02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bcon00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NL30_07765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcon03021
]
NL30_07765
Transcription machinery [BR:
bcon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NL30_07765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GSH-S_ATP
KIND
Motif
Other DBs
NCBI-ProteinID:
AKM39803
LinkDB
All DBs
Position
1:complement(1805890..1807950)
Genome browser
AA seq
686 aa
AA seq
DB search
MTKKLNEVSVEDDANQSDEQPAAAAAAAAPGKSKVRDRRAKEKALLKEAFATSTPGTAEE
LEERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPD
AETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEI
EIAKRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLLDPNASDSADTD
GFSAKEAEAIENEDEEAEEEEEEEEEEEDDGAAQASANAAQLEALKRASLEKFSQISEWF
DKMRRAFEKEGYKSKAYLKAQETIQTELMTIRFTARTVERLCDTLRAQVDEVRQVERQIL
HIVVDKCGMPRSEFIARFPGSETDLDWAEKIMAEGHSYSAVLSRNIPAIREQQQRLLDLQ
ARVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR
QILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNT
VAPADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIR
QIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaaagctgaacgaagtatccgtcgaagacgacgcaaatcagagcgacgagcag
cccgcagcagcagcggcagcggctgcaccgggcaaatccaaggtgcgcgatcgtcgcgcc
aaggaaaaggcgctactgaaggaagcgttcgcgacgagcacgccgggtacggccgaggag
ctcgaagagcgccgcgtgaaactgcgcgcgctgatcaagctcggcaaggagcgcggcttc
ctcacgtacgccgaaatcaacgaccacctgccggacaacttcaccgagaccgaagccctc
gagggcatcatcggcacgttcaacgacatgggcgtggcggtctacgagcaggcgccggac
gcggaaacgctgctcctgaacgacaacgcgcccgccgcgtcgtcggacgatgaagtcgaa
gaggaagcggaagtcgcgctgtccaccgtcgattcggaattcggccgcacgaccgatccg
gtccggatgtacatgcgtgaaatgggcacggtcgaactgctcacgcgcgaaggcgaaatc
gagatcgcgaagcggatcgaggacggcctgcgccacatggtgatggccatctccgcgtgc
ccgacgacgatcgccgacatcctcgcgatggccgaacgcgtcgcgaacgaagagatccgc
gtcgacgaactcgtcgacggcctgctcgatccgaatgcttcggactccgccgataccgac
ggtttctccgcgaaggaagcggaagccatcgagaacgaggacgaggaagccgaagaggaa
gaggaagaggaggaagaggaggaggacgacggtgccgcgcaggcatcggccaacgccgcc
cagctcgaagccctcaagcgtgcgtcgctcgagaagttctcgcagatcagcgagtggttc
gacaagatgcgccgcgcattcgaaaaggaaggctacaagtcgaaggcctacctgaaggcg
caggaaacgatccagaccgaactgatgacgatccgcttcaccgcgcgtaccgtcgaacgc
ctgtgcgacacgctgcgtgcgcaggtggacgaagtgcgtcaggtcgaacgccagatcctg
cacatcgtcgtcgacaagtgcggcatgccgcgctcggaattcatcgcgcgcttcccgggc
agcgagaccgatctcgactgggccgagaagatcatggccgaaggccattcgtacagcgcg
gtcctgtcgcgcaacatcccggcgatccgcgaacagcagcagcgcctgctcgacctgcag
gcgcgcgtcgtgctgccgctgaaggacctgaaggaaaccaaccgccagatggcggccggc
gaactgaaggcacgccaggcgaagcgcgaaatgaccgaggcgaacctgcgtctcgtgatc
tcgatcgcgaagaagtacacgaaccgcggcctgcaattcctcgacctgatccaggaaggc
aacatcggcctgatgaaggcggtggacaagttcgaataccgtcgcggctacaagttctcg
acctatgcgacgtggtggatccgtcaggccatcacacgctcgatcgcggaccaggcgcgc
acgatccgtattccggttcacatgatcgagacgatcaacaagatgaaccgcatctcgcgg
cagatcctgcaggaaaccggtctcgagccggatccggcaacgctcgccgagaagatggaa
atgccggaagacaagatccgcaagatcatgaagatcgcgaaggaaccgatctcgatggaa
acgccgatcggtgacgacgacgactcccatctcggcgacttcatcgaggacaccaacacg
gtcgcgccggcggatgccgcgctgcatgcgagcatgcgcgacgtcgtgaaggacgtgctc
gattcgctgacgccgcgtgaggcgaaggtgctgcggatgcgcttcggtatcgaaatgagc
accgatcacacgctcgaggaagtcggcaagcagttcgacgtcacgcgcgagcggatccgt
cagatcgaggccaaggcgctgcgcaagctgcgtcacccgagccgttccgacaagctgaag
tcgttcctcgaagggaactga
DBGET
integrated database retrieval system
