Burkholderia contaminans: NL30_10100
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Entry
NL30_10100 CDS
T03969
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcon
Burkholderia contaminans
Pathway
bcon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NL30_10100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcon03019
]
NL30_10100
03009 Ribosome biogenesis [BR:
bcon03009
]
NL30_10100
Enzymes [BR:
bcon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NL30_10100
Messenger RNA biogenesis [BR:
bcon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NL30_10100
Ribosome biogenesis [BR:
bcon03009
]
Prokaryotic type
rRNA processing factors
NL30_10100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AKM40235
LinkDB
All DBs
Position
1:2328201..2331356
Genome browser
AA seq
1051 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQ
ARAFMDIVMPDNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSPAPQRPAEPVAAPAPVAPATGGFIGWLKGLFGVSPAPAPAPVAPAPAKEQTARPAR
GERAEKSEQRGERGGDRNRNRRGGAQQAQGGRDQVAAGRGQSQRQEREGKEVREPREARE
PREGREPREGREPREGRENREGREGRSPREGREPRESREPRESREPREPRENREPREPRE
RVEQPEGVEAAGRGERQERRERGERRKPTQHAATLETVTRGETHPEPEADKAVAEALPGA
ELAADAEAGARDGEERRRRRRGRRGGRREREEDGAVVDHAEQGAEGEVTVQAVTPEAPAA
AEPAHTAAPAVVVAAAAAGAVVAEAVVEHHAEPAAPAAVEPQPAPVHVEAAPVEAAVVAQ
AAEPAPVAPAVDTEAGPAPVAVSPTDAFEVPAAPVAVEAPQPAPVEQAAPAVTTEAAPVV
AEPTHVEAAPVEAVAAPAPAPAQPAAAPASASLDTVLEQAGLVWVNTDADKFAAAQEAAS
RLPRPARVPRERKALPPVDTAPMQQVETTNH
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgttgat
gggcagaagctcatcgacatcgacatcgagacggccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgtatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccatggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgccctgcgcgaaggccaggaactgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgctgcccttaccacgttcatctcg
ctcgccggccgctacctggttctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgatgagcgtcaggaactgcgcgaaacgatggcgcaactgcagatcccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggcgtgcgatcgaagcggcgtcgcaaagcggc
aacgccggccagccgatgctgatctacctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgatacgaacgaaatccacgatcag
gcccgcgcattcatggacatcgtgatgccggacaacgtcgcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcccgcttccagatcgagcaccagatcgagaccgcatactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggccacc
cgcacgaacctcgaagcagccgacgaagtcgcccgccagctccgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggcgaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcatgaccgcgcgcgcgtccagatgggcaagatctcc
cgtttcggcctgatggaactgtcgcgccagcgcctgcgtccggccctgtcggaaggcagc
catgtgacctgcccgcgctgtaacggcaccggtcacatccgcgataccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgaacgcctgcgccacgacgacgcacgtctcgacgacccgcgcgcg
tcctggaagatggccgaggaagcagcccgcgaactcgagtcggaaaccggctacagcaag
cgcgcggcggaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggccccgagcccggcaccgcagcgcccggccgaacccgttgcagcgcccgcgcctgtc
gcgccggcaaccggcggcttcatcggctggctgaaaggtctgttcggcgtatcgccggcg
cccgcacccgcaccggttgctccggccccggcgaaggagcagacagcccgtccggctcgc
ggcgaacgtgccgagaagtccgagcagcgcggcgaacgcggcggcgatcgcaaccgcaac
cgtcgcggcggcgcccagcaggcgcaaggcggccgcgaccaggtcgcggcaggccgtggc
cagtcgcaacgccaggagcgcgaaggcaaggaagtgcgcgaaccgcgcgaggctcgtgag
ccgcgtgaaggccgcgaaccgcgcgagggtcgtgaaccgcgtgaaggccgcgagaaccgc
gaaggtcgcgagggccgtagcccgcgcgaaggccgcgagccgcgtgaaagccgcgagccg
cgtgaaagccgtgagccgcgcgaaccgcgtgagaatcgtgaaccgcgtgaaccgcgcgag
cgtgtcgagcagccggaaggcgtcgaagcagccggtcgcggcgagcgccaggaacgtcgc
gagcgcggcgagcgccgcaagccgactcagcatgcggcaacgctggaaaccgtcacccgc
ggcgaaacccatccggaaccggaagccgacaaggccgtcgcagaagccctgccaggcgcc
gaactggcagccgacgcggaagccggcgcgcgtgatggcgaggaacgtcgccgtcgccgt
cgcggccgccgcggcggtcgtcgcgagcgcgaggaagacggcgcagtcgtcgaccacgcc
gagcaaggcgcagagggcgaagtgacggtgcaagccgtgacgccggaagcaccggctgct
gccgaaccggcccacacggccgcaccggcagtcgtcgtggcagccgccgcggcaggcgcc
gtcgtcgccgaagccgtggtcgagcaccatgccgaaccggcagcaccggccgctgtggag
ccgcagccggcaccggtacacgtcgaagcagcgccggtcgaagcagcagtggtcgcccag
gcagcagaaccggcaccggtcgcaccggccgtcgatacggaagccggtccggctccggtc
gcggtttcgccgaccgacgcgttcgaagtgccggcagcgcctgtcgccgtcgaggcgcct
cagccggcacccgtcgagcaagccgcaccggccgtgacgaccgaagccgctccggtggtt
gcggagccgacccatgtcgaagcggcgccggtcgaggccgtcgccgcaccggcaccggcc
cccgcccaaccggcagccgcgcccgcttcggcgagcctggataccgtgctggagcaggcc
ggtctcgtctgggtgaacacggacgccgacaagtttgccgctgcgcaggaggccgcgtcg
cgcctcccgcgtccggctcgcgtgccgcgcgaacgcaaggcactgccgccggtcgatacg
gccccgatgcagcaggtcgaaacgacgaatcactga
DBGET
integrated database retrieval system
