Burkholderia contaminans: NL30_22245
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Entry
NL30_22245 CDS
T03969
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bcon
Burkholderia contaminans
Brite
KEGG Orthology (KO) [BR:
bcon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcon03016
]
NL30_22245
Enzymes [BR:
bcon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NL30_22245
Transfer RNA biogenesis [BR:
bcon03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NL30_22245
Prokaryotic type
tRNA splicing ligases
NL30_22245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Hexapep
Motif
Other DBs
NCBI-ProteinID:
AKM44221
LinkDB
All DBs
Position
2:1488025..1489248
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AA seq
407 aa
AA seq
DB search
MSEMDYQVMELANGKPVKMWTQGVAVEDEARAQLRNTAQMPFIFSHVAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMMAARTTLTASDLPDSLAGLRSAIERAVPHGRAPGRR
DPGAWGDRTPAAVTESWKSLQPGFLRIVDKYPKLEKTNHYAHLGTLGTGNHFIEVCVDEA
DHVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRNLAYFTEGSRHFDDYVEAVG
WAQDYARRNRQAMMDAVIGAARGVIAKPFSVDEHAVNCHHNYVQRERHFGEDVLVTRKGA
VSAQKGQLGIIPGSMGAKSFIVRGLGNPDSFCSCSHGAGRTMSRTEAKRRFTVDDQVKAT
QGVECRKDSGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatggattaccaggtgatggaactggcgaacggcaagccggtgaagatgtgg
acgcaaggcgtcgccgtcgaagacgaagcgcgcgcgcaactgcgcaacaccgcgcagatg
ccgttcatcttcagtcacgtcgcggtgatgccggacgtccacctcggcaagggctcgacg
atcggcagcgtgatcccgacgaagggcgcgatcattccggcggcggttggcgtcgacatc
ggctgcgggatgatggccgcgcgcacgacgctgacggcgtccgacctgccggattcgctc
gcgggcctgcgcagcgcgatcgaacgcgcggtgccgcacggccgcgcgccgggccgccgc
gatccaggtgcgtggggcgaccgcacgccggccgccgtgaccgaatcgtggaagtcgctg
caaccgggcttcctgcggatcgtcgacaagtatccgaagctcgaaaagacgaaccactac
gcgcatctcggcacgctcggcaccggcaatcacttcatcgaagtgtgcgtcgacgaagcg
gaccacgtgtggttcatgctgcacagcggctcgcgcggcgtcggcaatgcgatcggcagc
ctgttcatcgaactcgcgcaggccgacatgcggcagcacatcgcgaacctgccggatcgc
aacctcgcgtatttcaccgagggaagccggcacttcgacgactacgtcgaagcggtgggc
tgggcgcaggactacgcgcgccgcaaccggcaggcgatgatggacgcggtgatcggggcg
gcacgcggcgtgatcgccaagccgttctcggtcgacgaacacgcggtgaactgccaccac
aactacgtgcagcgcgaacgccacttcggcgaagacgtgctcgtgacgcgcaagggtgcg
gtgtcggcgcagaaggggcagctcgggatcattccgggctcgatgggggcgaagagcttc
atcgtgcgcgggctcggcaacccggacagcttctgctcatgcagccacggcgcgggccgg
acgatgagccgtaccgaagcgaagcgccgcttcaccgttgacgaccaggtgaaggcaacc
cagggcgtcgaatgccggaaggactcgggcgtcgtcgacgaaatcccgatggcctacaag
gacatcgacgcggtgatggcggcccagcgcagcctcgtcgaagtggtgcatacgctgcgc
caggtggtgtgcgtgaaaggatag
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