Burkholderia contaminans: NL30_29310
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Entry
NL30_29310 CDS
T03969
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bcon
Burkholderia contaminans
Pathway
bcon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NL30_29310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcon03019
]
NL30_29310
03016 Transfer RNA biogenesis [BR:
bcon03016
]
NL30_29310
Enzymes [BR:
bcon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NL30_29310
Messenger RNA biogenesis [BR:
bcon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NL30_29310
Transfer RNA biogenesis [BR:
bcon03016
]
Prokaryotic type
tRNA degradation factors
NL30_29310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
UPF0181
Motif
Other DBs
NCBI-ProteinID:
AKM43852
UniProt:
A0A3N8SMM9
LinkDB
All DBs
Position
2:complement(3036734..3038881)
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AA seq
715 aa
AA seq
DB search
MSMFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFP
LTVDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVL
SVNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQIKASSLDLV
VAGTERAVLMVESEADQLSEDVMLGAVVFGHEQMQVAIDAIHELVREGGKPEWDWQPAPK
NEALIARVTELAQNDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDALAAGTVAADKATV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTNSDGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE
IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAAASQSDTPPQQ
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaacaaggtcgtgaaggaattccagtggggccagcacaaggtgcgcctc
gaaaccggtgaagtcgctcgccaggcaagcggcgccgtgatcgtcgacgtggaagacacc
gtcgtgctggcaaccgtcgtcggcgcgaagtcggcgaagccgggtcaggatttcttcccg
ctgaccgtcgattacctcgagaagacctactccgccggcaagatcccgggcggcttcttc
cgtcgcgaaggccgtccgtcggagcacgagacgctgacgtcgcgcctgatcgaccgtccg
ctgcgcccgctgttcccggaaggcttctacaacgaagtccaggtcgtgatccacgtgctg
tccgtgaacccggaaatcccggcggacatccccgcgctgatcggcgcatcggctgcgctc
gccgtgtcgggcctgccgttcaacggcccggtcggtgccgcacgtgtggcctacatcgac
aacgcgtacgtgctgaacccgacgcgtgaccagatcaaggcatcgagcctcgacctcgtc
gtcgcaggtacggaacgtgccgtgctgatggtcgaatcggaagccgatcagctgtcggaa
gacgtgatgctgggcgccgtggtgttcggccacgagcaaatgcaggtcgcgatcgacgca
atccacgaactggtgcgcgaaggcggcaagcctgagtgggactggcagccggcaccgaag
aacgaagcgctgatcgcacgcgtgaccgagctggcacagaacgacctgctcgccgcttac
cagctccgcgacaagcaagcgcgctcgacgaagctgaaggaagtctacgcagcaacctcg
gcgaagctcgaggaagatgcgctggcggccggtacggtcgcagccgacaaggcaacggtc
ggcaacgtgctgttcgacatcgaagccaagattgtccgttcgcagatcctgaacggcgag
ccgcgcatcgacggccgcgacacgcgcaccgtgcgcccgatcgaaatccgcaccggcgtg
ctgccgcgtacccacggctcggcgctgttcacgcgcggcgagacgcaggcgctggtcgtc
gcgacgctcggcacgaagggtgacgagcagatcatcgacgcgctcgagggcgagtaccgc
gagcgcttcatgctccactacaacatgcccccgttcgcgaccggcgaaacgggccgcgtc
ggctcgccgaagcgccgcgaaatcggccacggccgcctcgcgaagcgtgcactggtcaag
tgcctgccgagcgccgatgaattcggctactcgatccgcgtcgtgtcggaaatcaccgaa
tcgaacggttcgtcgtcgatggcatcggtgtgcggcggctgcctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtcgcgggtatcgcgatgggcctgatcctcgaaggcaac
aagttcgcggtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtggccggcacggaacaaggcgtgacggcactgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctcgcacaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacgtcggcggtttcgggtgcgaacacgcaactgtcggaattcgcgccg
cgcatgatcacgatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggcggt
tcggtgatccgtgcgctgacggaagagaccggcacgacgatcgacatctccgacgacggc
gtcgtgacgatcgcgagcacgaacagcgacggcatggccgaagcgaagaagcgtatcgag
cagatcacggcagagatcgaagtgggccaggtgtacgaaggcacggttctgaagctgctc
gatttcggcgcgatcgtgaacctgctgccgggcaaggatggcctgctgcacatctcggaa
atcgtcaacgagcgtgtgaaggacatcaacgactacctgaaggaaggccagcaagtgaag
gtcaaggtcatccagacggacgaaaagggtcgcgtgcgtctgtcggcgaaggcgctgctg
aacgaagcagcggcggcgtcgcagtcggacacgccgccgcagcagtaa
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