Burkholderia contaminans: NL30_35150
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Entry
NL30_35150 CDS
T03969
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bcon
Burkholderia contaminans
Pathway
bcon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NL30_35150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcon03019
]
NL30_35150
Enzymes [BR:
bcon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NL30_35150
Messenger RNA biogenesis [BR:
bcon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NL30_35150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
Motif
Other DBs
NCBI-ProteinID:
AKM45114
LinkDB
All DBs
Position
3:1025657..1027102
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AA seq
481 aa
AA seq
DB search
MSFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLDGKDVMAGAQTGTGKTAGFALPLL
QRLVKHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFTDDIRAMAANILRSPVNISVSPPNATASKIKQWVVTVDKRNKPDLFMHLVA
ENKWEHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIKQTLRREEEPGFEAEHRVPETSATGQIIKKPKKPKKPKVPQAASAAMPVAGKKPRPQ
GGENKRKAAAPHAKPAGNGPDYTIGSPFSVQKPRGKSAGKPAAGARKPAGKPAGARGKRP
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgctcggcctgatcgatcccttgctgcgtaacctgcaggacctcaat
taccaggcccccacgccggtgcaggccaaggcgattcctgccgtgctcgatggcaaggac
gtgatggcgggcgcccagaccggcacgggcaagacggcgggttttgcgctgccgctgctg
caacggctggtgaaacacggcccggcggtgtccagcaaccgcgcacgtgtgctggtgctg
gtgcccacgcgtgaactggctgaacaggtgctgcaaagcttcatcgcctacggcaagggc
ctcgatttgcggtttctggccgcttacggcggtgtgagcatcaatccgcagatgatgaag
ttgcgcaagggcgtggatgtgctcgtggccacgccgggccgtttgctggacctcaatcgc
cagaacgcggtgcagttcgatcaggtgcagacgctggtgctggacgaagccgaccgcatg
ctggatctcggctttgcacgcgaactcaacgccgtttttgccgcgctgcccgcgcagcgc
cagacgctgctgttctcggccacgtttaccgacgatatccgcgcgatggcggcgaacatt
ctgcgcagtccggtcaacatcagcgtcagcccgcccaatgccacggccagcaagatcaag
cagtgggtggtgacggtggacaagcggaacaagcccgatcttttcatgcacctcgtggcc
gagaacaagtgggaacatgcgctggtcttcgtcaagacgcgcaacggcgtggattacctg
gcggcgatgctggacgaagcgggctatgccgtcgacaccatccacggcgacaagccgcaa
ccggcgcgcctgcgtgcactggagcgcttcaagacgggcgaagtccagatgctggtggcc
accgatgtggcggcgcgcgggctggatatcgacgacctgccgctggtgatcaacgtcgac
ctgccgatcgtggcgcaggactatgtgcaccgcatcggccgtaccggccgcgcgggcgcc
agtggcgtggcggtgtctctggtgtgtgcggatgaagcgccgcaactggccgcgatcgaa
gcgctgatcaagcaaacgctgcgccgcgaagaagagccgggtttcgaggccgaacaccgc
gtgccggaaaccagcgcgacgggccagatcatcaagaaacccaaaaagccgaagaagccg
aaagtgccgcaagctgcgtcggcggccatgccggtggcgggtaagaagccgcgtccgcaa
ggcggcgagaacaagcgcaaggctgcggcgccgcacgcgaagccggccggtaacggaccg
gactacaccatcggcagcccgttcagcgtgcagaagccgcgtggcaaatctgccggcaag
ccggcggcgggcgcgcgcaagccggctggcaaacccgctggcgcccgcgggaaacgtccg
tcctga
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