Bradysia coprophila: 119069333
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Entry
119069333 CDS
T08269
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
bcoo
Bradysia coprophila
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bcoo03041
]
119069333
Enzymes [BR:
bcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119069333
Spliceosome [BR:
bcoo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119069333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
OB_NTP_bind
DEAD
R3H
HA2_N
Ank_2
Ank
nSTAND3
Ank_5
AAA_19
Ank_3
ATPase
PhoH
AAA_22
Motif
Other DBs
NCBI-GeneID:
119069333
NCBI-ProteinID:
XP_037029293
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Position
X
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AA seq
1292 aa
AA seq
DB search
MATKATDRNSKNFLMEESLRIAVQKQIQAFIADDDMQTHAFPVSFTNTQRGFVHKYAQSM
GLKSKSHGKGINRFLTVYKPNTNTQISYDAVLTMSSESSNLIKRFLIEHKVTDRERSDAK
ELATNKKPNQYYYGFAIFKLLVPPHISVSRDIIDTHAKLPITEYRPTIIEMINTNRVVVI
AGDTGSGKTTQVPQYILEDHTARSEPCRIICTQPRRIAAVSMADRVAYERGEIVGSTVGY
QIRLESKVSPTSNLIYTTSGFLLRCLISDSSATWLSRITHIVMDEVHERDKYTDFLFIAI
KEAMADNPKLKVILMSATIDTDIYTAYFACPLLKIPGRMYPVEINQLEDVLGMLRYADKQ
IQSEALKPIASTVVKGNKKKSSKRLDVQAVVDDQSEIINETLQECFYGRCDFSQFFYLVT
GEGVDVNVKHSDTELNALMIAAINDLPDVIEVLLKMGADPSVIGGFGYTATEWALNYGHA
KCVELLQRAEELDPVNIENEQRKKDNQKRLQSYLEQTNETEIDQDLLFKTIKFIHEQMPD
GSILVFLPGYDTIVEQMNTISEGDIAANIEVLFLHGNMETSDQKRVFAPPAPGSRKVILS
TNIAETSLTIDDVVYVIDCGKVKQISYDSLSESTSLTSTWISKACAKQRMGRAGRTKPGF
CYRLYSKQRFDAMEEFTLPELLRIPLTELCLHARIMTKTTITDYLSMALQPPSTSTINQS
IKLLKTIGALNEKENVTELGYRLVDLPVDVQLGKMLLYSILLKCLDPVLTIVSALSVKDP
FVLNFEGDTPASLSRKTLADGSCSDLMVFIKLYQLWVEHKTKGQDYRFCRENQVSSGIME
LINGFRTQILGQLRTIGFILPRGAGDMADVNQNSNNFATVKACFVAGFYPNVCRVDRKVG
NLKSKQEKKLLPHVTSVLREKNLKSLKTILTHLPSEWLVYEEKSRVERLCLVRNNTVVTP
LTIALFGGPMYIPKNNVICLDEESDSENDDLPTVKLVLDDWIAFLTDEEVAVMVHELRIK
LNSMFMKTLCCVERKPGLSANDSRIVNVIAQVLETEDSIAGFRSPKDVGLRPILLPLKGN
PRNKNGVERHRGGPPNGKFFNQGHQHHNHQQSSFQFQSNNQLNYPSRSQPATLYNRNGNG
SVANNTPYVSHFKGQVMLNAKVRYFILHAESKKAIVNSWGSSKRWPYLVSSLRLFKSIKN
SEPSPDIILFFIVPNGAFFGVGRLNRTGNLLSIECLSKDEVSFAKTRNLKGFASNDPRGT
KNLDEYKNGEEIFDTTLAEKLFHLFIGTSASS
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaagcaaccgatcgcaattcgaaaaacttcctgatggaagaaagcttacgg
attgccgtgcagaaacaaatacaagcttttattgccgacgacgatatgcaaacgcatgca
tttcccgtatcgtttacaaacactcaacgaggctttgtacataagtacgctcagtcgatg
ggattgaaatcaaaatcacatggcaaaggcattaaccgtttcctgacagtctataagcct
aacactaatacgcaaatttcatacgacgccgtactgacaatgtcctcggaatcgtcgaat
ctaatcaaacgatttctcatcgaacacaaagtgaccgatcgcgaacgttccgatgccaag
gaactggcaacgaacaaaaaaccgaatcagtactactacggctttgccatattcaaactg
ttggtgccaccacacatttctgtttcgcgtgacatcattgacacgcacgctaaattaccc
atcaccgaataccgcccaacaatcattgaaatgatcaatacgaaccgagtggttgttata
gccggcgataccggttccggtaaaactactcaagtgcctcagtacatcttggaagatcac
actgccaggagtgaaccgtgccgcattatatgtacccaaccgcgaagaattgcagctgtg
tcaatggcagacagagttgcgtatgaacgaggagaaattgttgggagcacagttggctat
cagattcgcctggagagcaaagtgagcccgacatcgaatttgatttacactacaagcgga
tttctgctacgatgtctgatcagtgacagttcggcaacttggctgagtcgaatcacgcac
attgtgatggatgaagtacatgaacgcgacaagtacaccgattttttgtttattgccatt
aaggaggcaatggctgataatcccaaactgaaagtcatactgatgtcggcaacgattgat
acggatatttacacggcctattttgcctgtccgttgctaaaaattccggggcgcatgtat
cccgttgaaattaaccagctcgaagatgtgcttggaatgcttcgatatgcggacaagcaa
atacaaagcgaggcgttgaagccaattgcatcaacagtggtgaaagggaataaaaagaag
tcatcaaagcgactagatgttcaggccgtggtggacgatcagagcgaaatcattaacgag
acgcttcaggagtgtttttatggtagatgtgattttagtcagttcttctacttggttacc
ggtgaaggtgtcgatgtgaacgttaaacacagcgataccgaactgaatgcattgatgatt
gcggcgataaacgatcttccggatgttattgaggtattactgaaaatgggagccgatcca
tcagttatcggtggctttgggtacactgccacggagtgggctttaaattatggtcacgcc
aaatgcgttgaattgctgcagcgtgctgaagaactcgatcccgtaaacattgagaatgag
caaaggaaaaaggacaatcagaagcgcttgcagtcgtacctcgaacaaaccaacgaaacc
gaaatcgatcaggatttgctgttcaaaacaattaaattcattcacgaacagatgccagac
ggtagcattttggtgtttctgcccggctacgataccatcgtcgagcaaatgaatacgatc
agcgagggtgatattgctgccaacatcgaagtgttattcttgcatggaaatatggaaacg
tctgatcagaaacgggtttttgctccacctgcaccgggatcacgaaaagttattttgtcg
acgaacattgctgagacgagcttgaccatagacgacgtggtctatgtaatcgattgcggc
aaagtcaaacaaatttcgtatgactcgttgtccgagtctacgagtttaacgtcaacgtgg
atatcgaaagcatgtgcgaaacagcgaatgggtcgggctggccgcaccaaacccggtttt
tgttacagactgtattcgaagcaaagatttgatgcgatggaagagtttacgctgcccgaa
ctgttgcgtattccgttaacggagttatgtctgcatgcacgcattatgacaaagacaacc
ataaccgactacctctcgatggctcttcaaccgccgtcaacgtctaccatcaatcaaagt
attaaactgctgaagacaattggcgctctgaacgaaaaagagaacgtaaccgaattgggt
taccggctggtcgatttgcccgttgacgttcaactcgggaaaatgcttttgtactcgatt
ttactgaaatgtttggatccagttttgactattgtcagtgccttatcagtgaaggatcca
tttgtcttgaattttgagggtgacacgccagcgagtctgtctcgcaagacattggccgac
ggttcttgcagtgatcttatggtctttattaaattgtatcagttgtgggtggagcataag
actaaaggacaggactacagattttgcagagaaaatcaagtcagcagtggaattatggaa
ctcatcaacggattccgtacgcagattttgggacaactgcgtaccattggatttatattg
ccgagaggcgctggagacatggctgacgtaaatcagaactcaaacaactttgctactgtt
aaagcttgcttcgtagctggtttctatccgaatgtatgtcgagtcgatcgtaaagtcggc
aatttgaaatcgaaacaagagaaaaagctactgccgcatgtgacgtcggtgttgcgtgaa
aagaatttgaaatcgttgaaaacgatactgactcatctgccatccgaatggcttgtttat
gaagaaaagtcgcgcgtggaacgcttatgtctggtgcgaaataatacggttgtcacacca
ctcacgatagcccttttcggcgggccaatgtacataccgaaaaacaatgtaatttgcttg
gatgaggaatcggattccgaaaacgatgatctgccgacagtgaaattggtgctcgacgat
tggatagctttcctgacggacgaagaggttgccgttatggtccatgagttgcgaatcaaa
ttgaactcaatgttcatgaaaacgttgtgctgtgtggaaaggaaaccaggccttagcgca
aatgacagtcgaattgttaacgtaattgcgcaggtcctggagaccgaagattcaattgca
ggatttagaagtccgaaagatgtgggtctgcgaccgattcttttgccgctcaaaggtaat
ccgcgaaataaaaacggtgtggaacggcatagaggcggaccaccgaatggaaaattcttc
aaccagggacatcaacatcacaaccatcagcagtcctctttccaatttcaatcgaataat
caattgaactatcccagtcgttctcaaccagcaacgctttataaccgaaacggcaatgga
agtgttgccaacaacacgccgtatgtgtcgcatttcaagggccaagtgatgttaaatgcg
aaagttcggtactttattctgcacgccgagtcgaaaaaggcgatcgtgaattcgtgggga
tcgtcgaagaggtggccatatttggtatcctcgttacggctgttcaaatcgataaaaaac
tccgagccaagtcccgacatcattttgttcttcatagtgccgaatggggcattttttgga
gtgggtcgattgaatcgaaccggaaatcttttgagtattgaatgcttgtcgaaggatgaa
gtgtcttttgccaaaacacgaaatctcaaaggttttgctagtaatgatcctcgcggcact
aaaaacttggacgaatataaaaatggagaagagattttcgataccactttggcggagaag
ctgttccacctatttattggcaccagtgctagctcttaa
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