Bradysia coprophila: 119070325
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Entry
119070325 CDS
T08269
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bcoo
Bradysia coprophila
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcoo03016
]
119070325
Enzymes [BR:
bcoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119070325
Transfer RNA biogenesis [BR:
bcoo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119070325
Prokaryotic type
tRNA splicing ligases
119070325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
119070325
NCBI-ProteinID:
XP_037030489
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Position
X
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AA seq
506 aa
AA seq
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MVVRTYEEELKYIERINDYSYRIKIGFQPNMNVEGIFYVNKHLEKLMFEELRNACQPGKG
GGFLPGVKQIANVAALPGIVGKSVGLPDIHSGYGFAIGNMAAFDMDDPNAIVSPGGVGFD
INCGVRLIRTNLFEKDVQPVKEEIAQNLFDHIPVGVGSKGVIPMTAKDLDEALEMGMDWS
IREGYVWAEDKEHCEENGRMSGADASKVTSRAKQRGLPQLGTLGAGNHYAEIQVVDEIYD
KAAASAMGIEETGQVCVMIHSGSRGFGHQVATDALALMEKAMKRDKIVTNDRQLACARIN
SKEGETYLKGMAAAANFAWVNRSSMTYLARQAFAKQFNTTAEDLDMHVIYDVSHNVAKIE
EHMVDGKPRKLLVHRKGATRAFPPGHPLIPADYQSIGQPVLVGGTMGTCSYVLTGTEGAM
SQTFGSTCHGAGRALSRAKARAELKYTDVLENMKSLGIAIRVASPKLVMEEAPESYKNVT
DVVDTCAAAGLSKKCMKLRPIGVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtccgtacctacgaagaggaattgaagtacattgagcgaatcaatgactattca
tatcgcatcaaaatcggttttcaaccgaacatgaatgttgagggaattttctatgtaaat
aaacatttggagaaattaatgttcgaggaattgcgaaatgcctgtcagccgggcaaaggc
ggtggtttcctacctggtgttaaacaaatagcgaacgttgcagcattaccgggaatcgtt
ggaaagtcggtcggtttgcccgatattcattcgggctatggatttgccattggtaacatg
gctgcatttgatatggacgatccgaatgcaatagtatctcctggcggcgttggattcgac
atcaattgcggtgttcgcttgatacgcaccaacttattcgaaaaggatgtgcaaccggtt
aaagaggagattgcgcaaaatttgttcgatcatattccagtcggagtaggatcgaaagga
gtaattccaatgacagcaaaagacttggatgaggcactagaaatgggcatggattggtcg
attagagaaggatatgtgtgggctgaagacaaggaacattgtgaggagaatggtagaatg
tctggtgcagatgcgtcgaaggtcactagccgagcgaaacaacgaggtctgccacagttg
ggcactttgggtgccggtaatcattatgctgaaattcaagtggtcgatgaaatttacgat
aaagcagcagctagtgctatgggcattgaagaaacgggacaagtttgtgtgatgattcat
tcgggaagtcgaggctttggacatcaggtcgcaacggatgccttagctctaatggaaaaa
gcgatgaagcgtgataaaattgtaacgaatgaccgtcaactagcctgcgcacggattaat
tccaaagagggagagacttatttgaagggcatggctgcagctgcaaattttgcttgggta
aatcgcagttcgatgacatatttggctagacaagcatttgccaaacagttcaacacaacc
gctgaagatctggacatgcatgtaatctatgatgtgtcccacaacgttgcaaagatcgag
gaacacatggttgacggaaagccaagaaagctactcgttcatcgtaagggagcaacgcga
gcttttccacctggtcatccattgattccagctgactatcaatcaatcggtcaaccagtt
ttagtcggcggaacgatgggtacgtgcagttatgttctaactggtactgaaggagcaatg
agtcaaacgtttggctcgacttgccatggtgcgggtcgagctttatcgcgagctaaagca
cgagcggaattgaagtacactgacgttctggaaaatatgaagtccctgggcattgctatt
cgagttgcatcgccgaagttggtaatggaagaggctccggaatcctataaaaatgtaacg
gatgtggtcgatacgtgcgcagcagctggattaagtaagaagtgcatgaaattgaggcca
atcggcgtgatcaaaggataa
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