Bradysia coprophila: 119070511
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Entry
119070511 CDS
T08269
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bcoo
Bradysia coprophila
Pathway
bcoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119070511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcoo03019
]
119070511
Enzymes [BR:
bcoo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119070511
Messenger RNA biogenesis [BR:
bcoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119070511
mRNA degradation factors
3'-5' decay
Ski complex
119070511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
MTR4_beta-barrel
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
119070511
NCBI-ProteinID:
XP_037030767
LinkDB
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Position
X
Genome browser
AA seq
1224 aa
AA seq
DB search
MPIDLSWWKQPPPILEDSHETLLSYVLDPQVSLHNPDPYIFPRVPCEQRLYFAPSCSAST
VLAPQRDLQTGDITDYTEVSVDDAESNARNSMSLRRAPLPPEQATRGSAVNYPFWPGGFD
APEWKVDVSDVDELDFENNLLTVAPGFQNGLEFDVVEKSVVIDESVNDNATVNLLSVLDD
TDHNYLGLFMKETNADNAANDGDPTINFGALTLDDSLIEPVERPVLKISEADTVMRSMEW
AEMIDVSKPMNDFEVLVPNPAQTYSFTLDAFQKQAIVKLEEHSHVFVAAHTSAGKTVVAE
YAIALAKQHKTRSIYTSPIKALSNQKYRDFKKKFQDVGLITGDIQIDPTASCLIMTTEIL
RSMLYCGSEVTRDLEYVIFDEVHYINDAERGHVWEEVLILLPDHVSIVMLSATVPNTMEF
ANWVGQTKKRKVYVISTLKRPVPLMHYLYTGSGGKTKNDIFLIVNGSQEFLMKGYRDAIA
ATEKHSKTVPNAKDSRSRGGGGGGTNKSFKPNVLNPKQEQNLWVGLIDYLENNKKLPVVA
FTLSRNRCDRNLQALQSVDLCTTSEAYHIQSYFQKCLMKLKPEDRDIPQILTLQDSLKRG
IGVHHSGILPILKEIVEILFQSGHVKLLFATETFAMGVNMPAKTVIFDSHRKFDGSESRL
LRAAEYTQMAGRAGRRGLDPEGTVILICKGEVPPESELRTMILGRPLRLDSKFRLTYAMI
LNLLRVERVTVEDMMSHSFLEFDSRTKIPENQAMLKAAEKEISDMQEIGEHMQPLCQFYD
ISSEYIQLMDELLNDSVTQHKMMKELKPGRVLIVTQNHHYNKLGIFLSIASSRDLKFKVL
ILDDVLDSNSTPDSPTKNSLVMNRGELWHRMVSMTPQHKVYIPEGVGGHNILTIKLNNIV
DITKTNLKIEADKIVQNWEQRQIPRFKDSPPGPSVTKTITELYNLNNSVIAGDTKLEFFS
LKPELHTTTIMEQVAKLKKKLGDIIECTNASNFIQEFPVVFDRKTLEKKKDELNFKISKE
SLSLYPDYVNKLEVLKEMGYIDKQHEVKMKGRVACEMGSNELITTELVLCNTFTDLKPEE
IAALLSGLVFQAKTNSTPQLTENLKKCIDNIKEVDEEIIQIENKHKVSTHDEMIARDRLN
FGLVEVVYEWARNKSFAEIMKLTDIQEGIIVRCIQQLNETMQDVKDAARIIGNPALHQKM
EDASNAIQRNIVFAASLYLQSENK
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcgatctgtcatggtggaagcaaccgcctccgatacttgaagacagccatgag
actttgttgtcttatgttttggatccacaagtcagtttgcacaacccggatccatacatc
tttccgcgagtaccatgcgaacaacgactatatttcgcaccttcatgttcagcgagtacc
gttcttgccccacaaagggatcttcaaaccggtgatataactgattatacagaagtttcc
gttgacgatgccgaaagtaatgcacggaattcaatgtcattgagacgagctcctttgccg
ccggaacaggctactagaggttcggctgttaactacccgttttggccgggtggatttgat
gctccagaatggaaagtcgatgtgtcggatgtggatgagttagatttcgaaaataatcta
ttaaccgtggcgcctggatttcaaaatggtttagagttcgatgtcgtcgaaaagagcgta
gtcatcgatgaaagcgttaacgacaatgcaacggtcaatttgttgtcggtattagacgac
accgatcataattatctgggtctatttatgaaggaaacgaatgccgacaatgctgcaaac
gacggagacccaacgatcaattttggtgcattaacattggatgattcgttaattgaacca
gttgaacgacctgtcctgaagatatccgaagcagatacggttatgcggtcaatggaatgg
gctgaaatgatagatgtgtccaaaccgatgaatgattttgaggttctagtcccaaatccg
gctcaaacgtacagtttcacattggacgcgttccaaaaacaagcgattgtgaagctagaa
gaacacagtcacgtctttgtggctgctcatacatcagctggcaaaacagtagtcgctgag
tatgctatagctttggccaaacaacataagactcgatcgatttacacgtcaccaatcaag
gccttgtcgaatcagaagtatcgcgattttaaaaagaaatttcaagatgtcggccttatc
accggagatattcaaatcgatccaactgccagttgcctcataatgaccacggaaattctc
cggtcgatgttgtattgcggaagcgaagttaccagagatttggaatacgtcattttcgat
gaagtgcattatattaacgatgcggaaagaggtcacgtttgggaggaagttctgattttg
ttgccggatcatgttagtattgtgatgcttagtgccacagttcctaatacaatggaattt
gccaattgggtcggacaaacaaagaaacggaaggtttacgttatcagtacgttgaagcgg
cccgttccactgatgcactatctttacactggcagtggaggcaagaccaaaaacgacatt
ttcttaatcgtcaacggcagccaggaatttttgatgaaaggatatcgtgacgcaatagcg
gccacagagaaacattcaaaaacggtaccgaacgccaaagactcgagatcgagaggtggt
ggcggtggcggaacaaataaatcctttaaaccaaacgttttgaatccgaaacaagagcaa
aacctttgggtgggacttatcgattatcttgaaaacaataaaaagctgccagtggtcgcc
ttcactctgtcacgtaatcgatgcgatcgaaatcttcaggcactacaatcagttgatctg
tgcacaacatcggaagcgtatcacatccaatcgtacttccaaaaatgtttaatgaaatta
aaaccagaagatcgggacataccgcaaatcttaacactacaagattcactaaaacggggc
atcggtgtgcatcacagtggaattttgcccattctcaaggaaattgtggaaatactcttc
caatccggtcacgttaaattgctcttcgctacggaaacgttcgccatgggtgtcaatatg
cctgccaagacggttatttttgatagtcaccgcaaattcgatggatccgaatcacgtctt
ttacgtgccgctgaatacactcaaatggctggtcgtgctggacgacgtggtctggatccc
gaaggtacggtaattttaatttgcaaaggcgaagtaccaccggaaagtgaattacgaacg
atgatattgggtcgcccattgcgtttggattccaaatttcgtctcacgtacgcaatgata
ctgaatctactgagagtggaacgggttacggtggaagatatgatgtcacacagtttcttg
gagtttgattcgagaacgaaaataccggaaaatcaggcgatgctaaaggctgccgaaaag
gagatttccgatatgcaagaaattggcgagcatatgcagccattgtgtcaattctatgat
attagttccgaatatattcagctaatggatgaactattgaatgacagcgtcacgcagcat
aaaatgatgaaagaattgaaaccaggccgagtacttattgtcacacaaaatcatcactac
aataaacttggaattttcctatcaattgctagcagccgggaccttaagtttaaagtactg
attttggatgacgttctcgatagtaattcaactccggattccccaactaaaaattcgctt
gtgatgaatcgaggtgaattgtggcaccgcatggtttcgatgacgccccaacataaagtc
tacattcccgaaggtgttggcggacacaacattctcaccataaaactgaacaacatcgtc
gatataacgaaaacgaatctgaaaatcgaagccgataaaatcgtccaaaattgggaacag
cgtcaaatacccagattcaaagactcgccacccggtccgtccgtaacgaaaacgattacc
gaactgtacaatctgaacaacagcgtgattgccggcgacacgaaattggagtttttcagt
ctgaagcccgaattgcacaccaccacgattatggaacaggtggccaaattgaaaaagaaa
ctgggcgatatcattgagtgcacaaatgcgtcgaatttcatccaggagtttccggtagtg
tttgatcgcaaaacactggaaaagaagaaggacgagctgaactttaaaatttcgaaagag
agtctctcgctgtatcccgattacgtgaacaagttggaagtgctcaaggaaatgggctac
atcgacaaacagcatgaggttaagatgaaaggaagagtggcttgtgaaatgggttcgaat
gaactgattacaactgagctggtcttatgcaacacttttacggatttgaagcctgaagaa
attgcagctctgctgtccggactggtatttcaagcgaaaacgaattcaactccgcagtta
acggaaaatttgaaaaagtgcatcgataacatcaaagaagtggacgaagaaatcattcaa
atcgaaaacaaacacaaagtttccactcacgacgagatgatcgcacgagatcgattgaat
ttcggtttggtggaagttgtgtacgagtgggctcgcaataagtcctttgcggaaatcatg
aagctgaccgacattcaggagggcattatcgttcgatgcattcagcaattgaacgaaaca
atgcaagatgtgaaagatgctgcacgaataatcggcaatccagcgttgcatcagaaaatg
gaagatgcgtcgaatgcaattcaacggaacattgtgtttgcagcaagtttgtacctgcag
tctgagaataagtag
DBGET
integrated database retrieval system
