Bradysia coprophila: 119071672
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Entry
119071672 CDS
T08269
Name
(RefSeq) endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bcoo
Bradysia coprophila
Brite
KEGG Orthology (KO) [BR:
bcoo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bcoo03036
]
119071672
Chromosome and associated proteins [BR:
bcoo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
119071672
microRNA pathway
RISC loading complex
119071672
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
ResIII
Dicer_dsRBD
Dicer_dimer
Helicase_C
Dicer_platform
PAZ
SLFN-g3_helicase
Dicer_PBD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119071672
NCBI-ProteinID:
XP_037032546
LinkDB
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Position
IV:8441687..8446969
Genome browser
AA seq
1630 aa
AA seq
DB search
MSSLIEKQEQQEAKEMEIDLPLELPKARPYQEELLATAKEKNSLICLGTGAGKTYIAVML
ISHFSHELEPPYDEDGKRTFFLVPTRPLVKQQAAEIVKKSRLGEKDVGEYTGDMNVDFWS
KDVWLEHLRTKKVFVMTRQIFLNMLNSAIIPLSKVNLLIFDEAHHAAPKAKKKGKGSGKD
TNDVYKLIMDFIHSRPESDHPRILGLSASLINANSNAVALQRTIRDLEGTYKSSCTSVTD
LDDVRKYATDPVESIWEYASDSAVIGFDCAHVQTFLSSARDVFFEMDAYKASLDRKNDSN
RTEQNTDEIPTNSMAITLPISVDALKKCESMISDILQSMGPWCAIAACDFYIQEFQSYIE
LYQHSYPGFCSILTTVNDMIETVVGLLKYSLYIRQVSLNDMLLKYISNKMERLLLLLMEY
SDPNKPLAGIIFVQRRAMCKALCKWLQKIKELNLKKAKNPFDFLKTDYIVGEAARPGFAN
KIAVKAAQLQKKTLNKFRSGDLNILVSTSILEEGLDVSQCNLVVRYDGVDSFRQWVQSQG
RARSKDGRFVVFSNSTSVTQQSLDNFKGMFKELQTLATSRKHTNPSSVSRTPRNIPEDEM
PLINPVNGARITLDTAKAMVFMYCSRLPSDAFFSTNPYETRIEHPNGFQFVIRLPINSPI
KRAMKGPVKLNESLACKTAYLEVCRILREEDEIDESFVPYTKSSRLKRIIDEFNLTCSID
DDETYIDGPKPGTAKRRQIYSKSFETMFATLPIKSSTTICLYSIDVQPKTGRNSIGFICS
EDVPLNRIVSSFPVYIKTAEYKISVASCDTAFHLSPEQLHQVQLFHQVVFHESLGFKRKQ
LKFDDSSPVYVVPLNDEFGVDWNMVQVTLDRNNTNATIITKNDAYQQHFTFNESVYNDAM
VFRRYEPFGLFEVLKVSTKTPSSRFPNNDNGYTTYEDYFGKQYGLTIIHSHPLLCVDPIG
FNSSIKQVALTKAEQKRKPIELVPELLLIFPIPTSFHRQCRLLPAIFYRLCQFYNIETLR
ERIATEANFGWATANHNWGPLNVESVQSICRQEKVVRGSAKNSDSDANGDDSERSMDSND
MEVDSSFQMDEDMGSTISQSEDIYGDVDELKRKYSNFNVKAYAYSMKQKLMNDYKKFLEA
PVVGYDLGDHSQYLPQNSEIQRNRFVDFERVKSFDRHTRVDMFGPSPSLILQALTTNKAI
DMFNMERLETLGDSFLKLTTSAYFYYKLPVLNEGYLSLLKVNQISNRNLYRLGSKKDLAE
FVVAHQFQPCNNWLPPGFSADIDTSEKKEKQDGESCNKYTEQRISDKSIADCCESLIGAY
LLSSGPMGAVSFMTWLGIRIVDPQSTENNGHWLPPPRSPKSTSTSGDSEIKIKNLSSTLT
EFEERIGYNFHDKCFLIQAMTHVSYHDNTITDCYQRLEFLGDAVLDYLITRYIYEDPNRF
KPGDLTQLRASLTNNAFFGSLAVKNRFHVHLKMSSYDLYRSIHSFADKIKTDAKDDIVFG
NFMTLLDERETQDSDEAEVPKALGDVFEAVAGGIYLDSNYSLDAVWQVYYPLMASELENF
SKNIPKSPLSLLYMKYQSVKFSDAVAVNKREVSVTVTIKHKGGTFTEDGYGKNRYWAKSS
AAKRALRRKM
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcattgatagagaagcaagaacagcaagaagcaaaagaaatggaaattgattta
cccttggaactgcctaaggcccgtccttaccaggaggagctgctagcaactgccaaggaa
aaaaactcgttgatttgtctaggaacgggagcgggtaaaacgtacatagccgttatgctg
atttctcatttttcgcacgaactggagccgccctacgacgaagatggtaagagaacgttc
ttcttagtgcctaccaggcctttagtgaaacaacaggcagcagagattgtgaagaaaagt
cgattaggtgagaaagatgttggcgaatatactggtgatatgaatgtcgacttctggtcg
aaggacgtttggctggaacatttgcgtaccaagaaggtgttcgttatgacacggcagatt
ttcctcaatatgttaaattcggcaattattccgttgagtaaggtgaatctattgatattc
gacgaagcccatcatgcagcaccgaaggcaaagaaaaaaggaaagggcagtggaaaggac
acgaacgatgtctacaagctgataatggattttattcattcgaggcctgaatcggatcat
ccacgtattttgggactgtcagcaagtcttattaacgctaacagcaatgcggtggcatta
caacggacaattagggatttggaaggcacttataagtcgtcttgcacatccgttaccgat
ttggatgatgtacgtaaatacgcaacggatcccgtagaaagtatttgggaatatgccagc
gacagtgctgtgattggatttgattgtgctcacgttcagacatttttatcatcagctcgg
gatgttttctttgaaatggatgcatacaaagctagtctggaccgcaaaaatgacagcaac
agaaccgaacaaaatacagatgaaataccgaccaactccatggccattactctacccata
agtgtggatgctttaaagaaatgcgaaagtatgatcagtgacattcttcaatcgatgggt
ccttggtgtgcgatagctgcatgcgatttttatattcaagaatttcagagctacatcgaa
ctttaccaacactcatatccaggattttgtagcattttaacaacggttaacgacatgata
gagacagtcgtgggtcttctaaaatacagcctttacatacggcaagtgtcactcaacgat
atgctcctgaagtatatttccaacaaaatggaacgtcttcttttattgttgatggagtac
agcgatccgaataaacctttagctggaattatattcgtacagcgtcgcgctatgtgtaag
gcgttatgcaaatggttgcaaaagatcaaagaactcaatttaaagaaggcaaagaatcca
tttgactttctcaaaactgactacattgttggcgaagcagcccgacccggatttgccaat
aaaattgctgtcaaggctgctcaactccagaagaagactttgaacaagttccgcagtggt
gatctgaacatactcgtatcgacatcaattttggaagaaggactcgatgtgtcccagtgt
aatcttgttgttcgatatgacggcgttgactcattcagacagtgggttcaatcacaagga
cgagcaagatcaaaggatggtcgatttgtggttttcagtaactcaacatcggtgacccaa
caaagtcttgataacttcaaaggtatgttcaaagaattacaaacacttgcaacaagtaga
aagcatacgaatccttcgtccgtatcccgtaccccgcgtaatataccagaagacgaaatg
ccactgatcaacccagttaatggagcaagaattaccctagacaccgccaaggcaatggtc
tttatgtactgcagtcgactgccgtctgatgcattcttttccacaaatccatacgaaact
aggattgaacatccgaatggatttcaatttgtcattaggttgccaataaactctccaatt
aagcgggcaatgaaaggacctgttaagctaaacgaatccttggcgtgtaaaactgcttat
ttagaagtgtgtcgcattctacgcgaagaggacgaaatcgatgagtcgttcgttccatac
accaagtcatcaaggctcaagaggataattgacgaattcaatcttacatgttcgatcgac
gacgatgaaacgtacattgatggaccgaaacctggaacggccaaacgacggcaaatttat
tcaaagtctttcgagacgatgttcgctaccttgccaatcaagtcgtcgacaacgatctgt
ctttattcgattgacgtacagcccaaaactggcagaaattctattggtttcatttgttca
gaagatgtaccacttaaccggattgtttccagctttccagtttacatcaaaactgctgag
tataaaatttcagttgcgtcttgcgacacagcctttcatctcagcccggaacagcttcac
caagtgcaattattccatcaggtagtgtttcatgaaagtctcggattcaagaggaaacaa
ttgaagttcgacgactcgtctcctgtttatgttgttccgttgaacgatgaattcggtgtt
gattggaatatggttcaggtcacattggatcgcaataatacgaacgcaacgatcatcacc
aagaatgatgcataccaacaacatttcacattcaacgaaagtgtttacaacgatgctatg
gtgtttcgacgctatgaaccgttcggtcttttcgaagtccttaaagttagcactaagact
ccaagttcacgatttcccaataatgacaacggatacacgacatacgaggattatttcggt
aaacaatatggcttgacgatcattcattcgcacccgttactgtgtgtggatccaatcggc
tttaacagttccattaaacaagtggcactaaccaaagccgaacagaaacgtaaacctatt
gagctagttccagaattgttgttgatctttccaataccgacgtcgtttcatcgtcagtgc
cgtcttctacctgcaattttttatcgattgtgtcagttctacaacatagaaacattgaga
gaacgaatagcgacggaggctaattttggatgggcaacagctaatcacaattggggtcca
ttgaacgttgagtctgtgcagagtatttgccgacaggagaaagtagtgcgaggctctgca
aagaacagcgatagtgatgcaaacggcgacgacagtgagcggtcgatggattctaacgat
atggaagtggattcttcatttcaaatggatgaagatatgggttcaacgattagtcagtct
gaagacatttacggcgatgtcgatgaattgaaaagaaaatattcgaacttcaatgttaaa
gcctatgcgtactcgatgaagcagaaactgatgaacgactacaagaagtttttggaggcg
ccagtagttggctacgatttaggtgatcacagccagtatttgccacaaaattctgaaatt
caaagaaatcgcttcgttgactttgaaagagtcaaatcatttgatcgtcacactagggtt
gacatgtttggacctagtcccagtttaattctgcaggcattaacgacaaacaaagcaatt
gacatgttcaatatggagagattagagacacttggcgacagtttccttaaattaacaacg
tctgcgtatttttactacaagctaccagtactcaatgagggatacttgtctttattgaaa
gtgaatcaaatctcgaatcgtaatctgtatcgtttgggatcaaaaaaagatttggccgaa
tttgtggtagctcatcaatttcaaccgtgcaacaattggcttcctccaggattttccgcg
gacatagatacgtcggagaaaaaggagaaacaagatggagaatcatgcaacaagtacact
gagcaacgaatttccgataaatcaatagctgattgttgcgaatcattaattggagcatat
ctgttgtcgagtggaccaatgggcgcagtaagtttcatgacatggttgggtattcgaatt
gtggatccacagtcgactgaaaacaatggccattggcttccaccgccccgatcaccaaaa
tctacttcaacatcgggtgattcagaaatcaaaatcaaaaacctttcgtcaacgttgacc
gaattcgaagagcgtattggatacaatttccatgacaaatgtttcctcattcaggctatg
acacatgtgtcgtatcacgacaataccataactgattgctaccagcgattggagttcctc
ggagatgctgtcttggactatctcataacacggtacatatacgaagatcccaaccgcttt
aagcctggcgatttgactcagctaagagcatctctgacgaacaatgcattttttggctcg
ctggcggtcaagaatcgatttcacgttcacctaaaaatgagttcgtacgatctctaccgt
tccattcattcgtttgctgataaaattaaaaccgatgcaaaggatgacattgtctttggc
aatttcatgacgcttctcgacgaacgagagacccaggattcagatgaagccgaggtgccg
aaggcgttgggtgatgtgttcgaagctgttgctggtggtatctatttggactctaattat
tcgctggatgctgtatggcaggtctactacccactcatggcgagtgagcttgagaacttc
agcaaaaatattccgaaaagtccgttgagtttgctgtacatgaaatatcaatctgtgaaa
ttcagcgacgctgtagcagtgaacaagcgtgaggtcagtgtgactgttacgatcaagcat
aaaggaggaacgtttaccgaggatggctacggcaaaaatcgttattgggctaaaagttcg
gcagcaaaacgtgccttaaggcgaaaaatgtaa
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